EY702447

Overview
NameEY702447
Unique NameEY702447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.793e-16
Identity = 68/171 (39.77%), Postives = 88/171 (51.46%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIP---SY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            ++PVR+LVTGA  QIGYALVP+IA GVMLG D PVILH    +  +  +   +  +     P              C G++            P KE MER     K  S +  S+  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + ++  TR DHN  LG
Sbjct:    3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGG----FPRKEGMERKDVMSKNVS-IYKSQASALEKH-AAANCKVLVVANPANTNALILKEFAPSIPE-RNISCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.793e-16
Identity = 68/168 (40.48%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIPSY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            +EPVR+LVTGA  QIGYALVP+IA G+MLG D PVILH       +  +   +  +     P             G   G          P KE MER     K  S +  S+  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + ++  TR DHN  LG
Sbjct:    3 KEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDAVEGC-TGVNVAVMVGGFPRKEGMERKDVMSKNVS-IYKSQAAALEKH-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNISCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.764e-16
Identity = 68/171 (39.77%), Postives = 87/171 (50.88%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHS---AWYSSCSTGIEWCEDGVG*CCIPSY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            +EPVR+LVTGA  QIGYALVP+IA G+MLG D PVILH     + +    G++          +            C G++            P KE MER     K  S +  S+  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + +   TR DHN  LG
Sbjct:    3 KEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNVAVMVGG----FPRKEGMERKDVMSKNVS-IYKSQASALEKH-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNITCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.222e-16
Identity = 69/171 (40.35%), Postives = 86/171 (50.29%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIP---SY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            +EP+R+LVTGA  QIGYALVP+IA GVMLG D PVILH       +  +   +  +     P              C G++            P KE MER     K  S +  S+  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + V   TR DHN  LG
Sbjct:    3 KEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNVAVMVGG----FPRKEGMERKDVMSKNVS-IYKSQASALEAH-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNVTCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 8.127e-16
Identity = 68/171 (39.77%), Postives = 86/171 (50.29%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIP---SY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            +EP+R+LVTGA  QIGYALVP+IA GVMLG D PVILH       +  +   +  +     P              C G++            P KE MER     K  S +  S+  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + +   TR DHN  LG
Sbjct:    3 KEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAFPLLKGIVATTDVVEACTGVNVAVMVGG----FPRKEGMERKDVMSKNVS-IYKSQASALEAH-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNITCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.088e-15
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  162 VLGIXXXXXXLNGAKMELADAAFPLIKGVGATTDAVEACTGVHIAVMGGGFSQQKNEWREQHVMANNVPIYKAHAS 389
            +L I      LNG KMEL DAAFPL+KGV ATTDA EAC GV++AVM GGF +++   R+  VM+ NV IYKA AS
Sbjct:   41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKD-VMSKNVSIYKAQAS 115          

HSP 2 Score: 81.6481 bits (200), Expect = 6.880e-15
Identity = 65/170 (38.24%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   50 EPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIP---SY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            EP+R+LVTGA  QIGYALVP+IA G+MLG + PVILH       +  +   +  +     P              C G++            P KE MER     K  S +  ++  AL+ H ++ NC   V  +PAN  ALILK FAPSIP  + ++  TR DHN  LG
Sbjct:    4 EPLRVLVTGAAGQIGYALVPMIARGIMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAAEACKGVNVAVMVGG----FPRKEGMERKDVMSKNVS-IYKAQASALEQH-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNISCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.002e-14
Identity = 66/170 (38.82%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   50 EPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVILHSAWYSSCSTGIEWCEDGVG*CCIP---SY*RCWCYH*CC*GMHWGPYCRYGWWLLPTKERMERTTCDGKQRSNLQGSRFLALDHHRSSRNCPGPVGPHPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGLG 550
            EP+R+LVTGA  QIGYALVP+IA GVMLG + PVILH       +  +   +  +     P              C G++            P KE MER     K  S +  S+  AL+ + ++ NC   V  +PAN  ALILK FAPSIP  + +   TR DHN  LG
Sbjct:    4 EPLRVLVTGAAGQIGYALVPMIARGVMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVAEACKGVNVAVMVGG----FPRKEGMERKDVMPKNVS-IYKSQASALEQY-AAPNCKVLVVANPANTNALILKEFAPSIPE-KNITCLTRLDHNRALG 166          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 40.817 bits (94), Expect = 6.077e-12
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVIL 157
            + PV + VTGA  QIGYAL+  IA+G +LG D PV L
Sbjct:    3 KAPVNVTVTGAAGQIGYALLFRIASGQLLGVDTPVRL 39          

HSP 2 Score: 37.3502 bits (85), Expect = 6.077e-12
Identity = 21/54 (38.89%), Postives = 29/54 (53.70%), Query Frame = 3
Query:  198 GAKMELADAAFPLIKGVGATTDAVEACTGVHIAVMGGGFSQQKNEWREQHVMAN 359
            G  MEL D AFPL+ GV    D  +A  GV++A++ G   + K   R   + AN
Sbjct:   53 GTAMELDDCAFPLLAGVDIYDDPRKAFDGVNVALLVGARPRTKGMERRDLLEAN 106          

HSP 3 Score: 33.113 bits (74), Expect = 6.077e-12
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 2
Query:  443 HPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGL 547
            +PAN  ALI +A AP IPA +  A  TR DHN  L
Sbjct:  132 NPANTNALIAQAHAPDIPADRFTAM-TRLDHNRAL 165          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 39.2762 bits (90), Expect = 7.857e-12
Identity = 21/54 (38.89%), Postives = 30/54 (55.56%), Query Frame = 3
Query:  198 GAKMELADAAFPLIKGVGATTDAVEACTGVHIAVMGGGFSQQKNEWREQHVMAN 359
            G  MEL D AFPL++G+  T DA  A  G ++A++ G   + K   R   + AN
Sbjct:   53 GTAMELDDCAFPLLQGIEVTDDARTAFDGTNVALLVGARPRTKGMERGDLLEAN 106          

HSP 2 Score: 38.891 bits (89), Expect = 7.857e-12
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 2
Query:   53 PVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVIL 157
            PV + VTGA  QIGYAL+  IA+G ++G D PV L
Sbjct:    5 PVTVTVTGAAGQIGYALLFRIASGQLIGPDTPVRL 39          

HSP 3 Score: 32.7278 bits (73), Expect = 7.857e-12
Identity = 18/35 (51.43%), Postives = 22/35 (62.86%), Query Frame = 2
Query:  443 HPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGL 547
            +PAN  ALI +A AP +PA +  A  TR DHN  L
Sbjct:  132 NPANTNALIAQAHAPDVPAERFTAM-TRLDHNRAL 165          
BLAST of EY702447 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 41.5874 bits (96), Expect = 1.015e-11
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 2
Query:   47 REPVRLLVTGAPRQIGYALVPLIATGVMLGTDHPVIL 157
            R PV + VTGA  QIGYAL+  IA+G +LG D PV L
Sbjct:    3 RTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKL 39          

HSP 2 Score: 36.5798 bits (83), Expect = 1.015e-11
Identity = 20/54 (37.04%), Postives = 29/54 (53.70%), Query Frame = 3
Query:  198 GAKMELADAAFPLIKGVGATTDAVEACTGVHIAVMGGGFSQQKNEWREQHVMAN 359
            G  MEL D AFPL++G+  T D   A  G ++A++ G   + K   R   + AN
Sbjct:   53 GTAMELDDCAFPLLQGIEITDDPNVAFDGANVALLVGARPRTKGMERGDLLEAN 106          

HSP 3 Score: 32.3426 bits (72), Expect = 1.015e-11
Identity = 18/35 (51.43%), Postives = 22/35 (62.86%), Query Frame = 2
Query:  443 HPANPTALILKAFAPSIPA*QTVAWPTRSDHNPGL 547
            +PAN  ALI +A AP +PA +  A  TR DHN  L
Sbjct:  132 NPANTNALIAQAAAPDVPAERFTAM-TRLDHNRAL 165          
The following BLAST results are available for this feature:
BLAST of EY702447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MDHC_MEDSA2.793e-1639.77Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC1_ARATH2.793e-1640.48Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC2_ARATH4.764e-1639.77Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_MAIZE6.222e-1640.35Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_ORYSJ8.127e-1639.77Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_MESCR3.088e-1559.21Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_BETVU2.002e-1438.82Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDH_THEFY6.077e-1256.76Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_SACEN7.857e-1238.89Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_STRCO1.015e-1159.46Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-A11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702447 ID=EY702447; Name=EY702447; organism=Citrus sinensis; type=EST; length=936bp
GTTACCCTCCAGGACCCGTCCGAATTCCCTGGGCAACCCACGCGTCCGGG
AACCAGTTCGCCTTCTTGTCACCGGCGCCCCACGGCAAATTGGATATGCA
CTTGTCCCCCTGATTGCTACGGGAGTGATGTTGGGTACTGACCACCCTGT
GATTCTGCACAGTGCTTGGTATAGCAGCTGCAGCACAGGCATTGAATGGT
GCGAAGATGGAGTTGGCTGATGCTGCATTCCCTCTTATTAAAGGTGTTGG
TGCTACCACTGATGCTGTTGAGGCATGCACTGGGGTCCATATTGCCGTTA
TGGGTGGTGGCTTCTCCCAACAAAAGAACGAATGGAGAGAACAACATGTG
ATGGCAAACAACGTTCCAATCTACAAGGCTCACGCTTCCTGGCCCTGGAC
CACCACCGCAGCTCCCGCAACTGCCCGGGTCCGGTTGGCCCTCACCCTGC
CAACCCCACTGCCTTGATTCTGAAAGCATTTGCGCCATCAATCCCTGCCT
AACAAACAGTAGCATGGCCGACCAGATCCGATCATAACCCGGGCCTTGGG
ACCAAATATCCGAGAAACTGGAACTGCCCCCCACCCGACGGCTAAGAAGT
GGTGAGGTATTCGCGGAACATCCGTTCAGTCTCCCCCCACCCTGACTCCC
ACCCTCCCCACATGTCAATATCTTGCCCCGGGCGAAAACCCTCACCTTTT
GTCTTGCCACGTACGGACCCCGGGCTAACGCCACAAATCCTCACCCCCGT
CCACCAACCGGGGCCCGCCACCTCCACCCCCAGACACCCCCCGAGCCCCC
TGCCTGGCCGCCCCGTCTGGTTGGACCAAAAACCCGGATAGGCCCACCCC
ACATCTCAGCAGGCCCCGGGCCCGCCGGGGGGCCCTACTCCTAAGGGCTC
CCACACGCCCCCCCCGGGCCCCCATATCATCACCCG
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