EY720081

Overview
NameEY720081
Unique NameEY720081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: YBAO_ECOLI (Uncharacterized HTH-type transcriptional regulator ybaO OS=Escherichia coli (strain K12) GN=ybaO PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -1
Query:    7 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLI 378
            +D+ D K+LALLQ+D T S+  +AE VNL+ TPCW+R+++L+DDG++     LLDP  +GL LT FV IKT  H+ +W    +  V  +P V+ F RMAG+ DYL++V V DM  YD FY+RL+
Sbjct:    2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLV 125          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: YBAO_ECOL6 (Uncharacterized HTH-type transcriptional regulator ybaO OS=Escherichia coli O6 GN=ybaO PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -1
Query:    7 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLI 378
            +D+ D K+LALLQ+D T S+  +AE VNL+ TPCW+R+++L+DDG++     LLDP  +GL LT FV IKT  H+ +W    +  V  +P V+ F RMAG+ DYL++V V DM  YD FY+RL+
Sbjct:    2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLV 125          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: YBAO_ECO57 (Uncharacterized HTH-type transcriptional regulator ybaO OS=Escherichia coli O157:H7 GN=ybaO PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -1
Query:    7 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLI 378
            +D+ D K+LALLQ+D T S+  +AE VNL+ TPCW+R+++L+DDG++     LLDP  +GL LT FV IKT  H+ +W    +  V  +P V+ F RMAG+ DYL++V V DM  YD FY+RL+
Sbjct:    2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFYKRLV 125          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: GRP_ZYMMO (Glutamate uptake regulatory protein OS=Zymomonas mobilis GN=grp PE=4 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 61/125 (48.80%), Postives = 89/125 (71.20%), Query Frame = -1
Query:    4 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLIA 378
            +D  DIKIL LLQ DAT ++AE++E+  LS   CWRRI+ L+ DGVI     LLDP+ +GL +TVFV I+ ++H++ W  + +  V   P V+EF+R+AGDIDYLLK+ V  ++ YDR Y++L++
Sbjct:    5 LDDFDIKILDLLQHDATATMAELSEKTGLSANACWRRIRLLEADGVIKNRVTLLDPQKIGLGITVFVCIRCAEHSQDWLDNFLQIVNESPEVIEFYRLAGDIDYLLKLQVASISEYDRLYKKLVS 129          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: ZRP_ZYMMO (HTH-type transcriptional regulator zrp OS=Zymomonas mobilis GN=zrp PE=4 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = -1
Query:    7 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLI 378
            +D  D  IL+LLQ +A   ++EIAE+V LSV+ C RR+ +L+++G I     LLD + + L  T+F+ +KT  H   + +    AV A+P +VE HR+ G+ DY+LK+ + ++  YD  Y++++
Sbjct:    2 IDYRDRHILSLLQANAEMPLSEIAERVALSVSACSRRVARLREEGYIKGTIALLDRKKINLPTTIFLLVKTGLHTGNYLEQFHAAVSAIPEIVEVHRLTGNFDYILKLALPNVEYYDVIYKQIL 125          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: BKDR_PSEPU (Bkd operon transcriptional regulator OS=Pseudomonas putida GN=bkdR PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = -1
Query:   22 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRF 378
            +D+TDI IL  LQ++A  + AE+A  VNLS TPC+ R++ +++ GVI +   LL P ALGL++ VF+ +   +  E+        +   P V+E + M GD DYLL+V++  + A +RF
Sbjct:    4 LDRTDIGILNSLQENARITNAELARSVNLSPTPCFNRVRAMEELGVIRQQVTLLSPEALGLDVNVFIHVSLEKQVEQSLHRFEEEIAERPEVMECYLMTGDPDYLLRVLLPSIQALERF 122          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: Y224_HAEIN (Uncharacterized HTH-type transcriptional regulator HI0224 OS=Haemophilus influenzae GN=HI0224 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 40/124 (32.26%), Postives = 73/124 (58.87%), Query Frame = -1
Query:    7 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDRFYRRLI 378
            +D+ D  IL +LQ+DA   + E++E+VN SV  C RR+Q L D G+I +   ++ P+A+G  ++VFV ++    +  + +     +     VV  + ++GD D++L +  +DM +Y  F RR++
Sbjct:   19 LDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAVGRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAFTRRVL 142          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: PUTR_RHIRD (Proline dehydrogenase transcriptional activator OS=Rhizobium radiobacter GN=putR PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = -1
Query:   25 MDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAYDR 378
            +D  D+KIL  L +D   SV +++++V LS TPC  R+++L D+G I     +L+P+ LG++   F  +K S   EK  +    AV  +  V E H +AG  DYLLKV   D+  Y R
Sbjct:   10 LDHFDLKILEALSEDGRMSVLQLSKRVGLSKTPCQTRLKRLVDEGYILGFRAVLNPQKLGVDHIAFAEVKLSDTREKALEEFNTAVRKIKEVEECHMIAGAFDYLLKVRTSDIRKYRR 127          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: LRP_KLEPN (Leucine-responsive regulatory protein OS=Klebsiella pneumoniae GN=lrp PE=3 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = -1
Query:   31 GIPMDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAY 387
            G  +D+ D  IL  LQKD   S  E++++V LS TPC  R+++L+  G I     LL+P  L  +L VFV I  ++      +   +AV  L  + E H ++GD DYLLK  V DM+AY
Sbjct:    9 GKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAY 127          
BLAST of EY720081 vs. ExPASy Swiss-Prot
Match: LRP_SHIFL (Leucine-responsive regulatory protein OS=Shigella flexneri GN=lrp PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = -1
Query:   31 GIPMDQTDIKILALLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAILLDPRALGLNLTVFVSIKTSQHNEKWTQSLINAVMALPNVVEFHRMAGDIDYLLKVVVEDMAAY 387
            G  +D+ D  IL  LQKD   S  E++++V LS TPC  R+++L+  G I     LL+P  L  +L VFV I  ++      +    AV  L  + E H ++GD DYLLK  V DM+AY
Sbjct:    9 GKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAY 127          
The following BLAST results are available for this feature:
BLAST of EY720081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
YBAO_ECOLI1.505e-3149.19Uncharacterized HTH-type transcriptional regulator... [more]
YBAO_ECOL61.505e-3149.19Uncharacterized HTH-type transcriptional regulator... [more]
YBAO_ECO571.505e-3149.19Uncharacterized HTH-type transcriptional regulator... [more]
GRP_ZYMMO4.379e-3148.80Glutamate uptake regulatory protein OS=Zymomonas m... [more]
ZRP_ZYMMO2.663e-2037.90HTH-type transcriptional regulator zrp OS=Zymomona... [more]
BKDR_PSEPU1.908e-1839.50Bkd operon transcriptional regulator OS=Pseudomona... [more]
Y224_HAEIN3.046e-1632.26Uncharacterized HTH-type transcriptional regulator... [more]
PUTR_RHIRD3.979e-1638.14Proline dehydrogenase transcriptional activator OS... [more]
LRP_KLEPN2.579e-1539.50Leucine-responsive regulatory protein OS=Klebsiell... [more]
LRP_SHIFL3.368e-1539.50Leucine-responsive regulatory protein OS=Shigella ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-G07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720081 ID=EY720081; Name=EY720081; organism=Citrus sinensis; type=EST; length=615bp
CGCGGCGATCAGGCGGCGGTAGAAGCGGTCATAGGCCGCCATGTCCTCGA
CCACCACCTTGAGCAGGTAGTCGATGTCGCCGGCCATGCGATGGAACTCG
ACCACATTCGGCAGCGCCATGACCGCGTTGATCAGGCTCTGGGTCCATTT
CTCGTTGTGCTGGCTGGTCTTGATCGAGACGAACACGGTCAGGTTCAGCC
CCAGCGCGCGCGGGTCCAGCAGGATGGCGTTGCGGGCGATGACGCCATCG
TCCTTGAGCTTCTGGATGCGGCGCCAGCAGGGGGTGACGGACAGATTGAC
CTGCTCGGCGATCTCGGCGACCGAGCAGGTGGCGTCCTTCTGCAGCAACG
CCAAGATCTTGATGTCCGTCTGGTCCATGGGGATTCCTCAAGCGATATCG
CCGCAATCTTGCCCTGACACCCCGCCCGCGTCCAGCCGCGGAACACCCTA
AGCAGCCCCACGGACCGCCCGGGGCGCGGATTCAGTACGTGCCGGGGTAG
CCGCCGCCATCGAGCAGGATGTTCTGCGCCGTCATGTAGCCCGCGTGCGC
CGAGCAGACATAGGCGCACAGCGCCCCCAGCTCCTCGGGCTGGCCGTAGC
GGCCGGCCGGGCTGG
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