EY702436

Overview
NameEY702436
Unique NameEY702436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2348 contig Csv1_Contig2348:735..1659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_ARATH (Probable mitochondrial saccharopine dehydrogenase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.096e-81
Identity = 148/236 (62.71%), Postives = 178/236 (75.42%), Query Frame = 2
Query:   14 RVRTQDSRTVIPGPAPLRGPLVESHNTIGLWAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPKGGVFPPGIVFGATELPQRLPENGISFDVFPRV 721
            R R +  R  I GP P +GP +E+  TIGLWA+KL SADA VVRRTL+ LTE PHGLPG NESPEQ +KREAFWS++KPAHFGVK+ SKSL                       WLLLKFPS+FSLGWF+K+GPSE+EVESA+FKMWFIG G+S+ SL SQG  KPD+EIITR++GPEIGYI TPI L+QC LIVL QRE L KGGV+ PGIVFG+T++ QRL +NGISF++  ++
Sbjct:  216 RSRPRRPRPTICGP-PAKGPTLENQKTIGLWALKLPSADAVVVRRTLTTLTEKPHGLPGINESPEQIQKREAFWSSIKPAHFGVKITSKSLFGIFRYVTLGVSLGLLSKFSFGRWLLLKFPSVFSLGWFQKKGPSEEEVESATFKMWFIGRGYSEESLASQGETKPDLEIITRISGPEIGYITTPITLVQCGLIVLGQRESLVKGGVYTPGIVFGSTDIQQRLEDNGISFELISKI 450          
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_PONAB (Probable saccharopine dehydrogenase OS=Pongo abelii GN=SCCPDH PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 80/226 (35.40%), Postives = 115/226 (50.88%), Query Frame = 2
Query:   53 PAPLRGPLVESHNTIGL------WAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPK-GGVFPPGIVFGATELPQRLPENGISFDV 709
            P PL GP ++    I        ++I  + +D +VVRRT   L EN        ESP Q     A ++TV      +KL    L                        LL+KFP  FS G+F K+GP++ ++++ASF + F G G+S    +     KP+++I T+V GPE GY+ATPI ++Q A+ +L+    LPK GGVF PG  F  T+L  RL ++GI F V
Sbjct:  221 PVPLVGPKLKRRWPISYCRELKGYSIPFMGSDVSVVRRTQRYLYEN------LEESPVQY----AAYATVGGITSVIKLMFAGLF-----------FLFFVRFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQG--IGTDKNKPNIKICTQVKGPEAGYVATPIAMVQAAMTLLNDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIEFSV 423          
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_HUMAN (Probable saccharopine dehydrogenase OS=Homo sapiens GN=SCCPDH PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.241e-25
Identity = 81/226 (35.84%), Postives = 115/226 (50.88%), Query Frame = 2
Query:   53 PAPLRGPLVESHNTIGL------WAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPK-GGVFPPGIVFGATELPQRLPENGISFDV 709
            P PL GP ++    I        ++I  + +D +VVRRT   L EN        ESP Q     A + TV      +KL    L                        LL+KFP  FS G+F K+GP++ ++++ASF + F G G+S  +   +   KP+++I T+V GPE GY+ATPI ++Q A+ +LS    LPK GGVF PG  F  T+L  RL ++GI F V
Sbjct:  221 PVPLIGPKLKRRWPISYCRELKGYSIPFMGSDVSVVRRTQRYLYEN------LEESPVQY----AAYVTVGGITSVIKLMFAGLF-----------FLFFVRFGIGRQLLIKFPWFFSFGYFSKQGPTQKQIDAASFTLTFFGQGYSQGTGTDKN--KPNIKICTQVKGPEAGYVATPIAMVQAAMTLLSDASHLPKAGGVFTPGAAFSKTKLIDRLNKHGIEFSV 423          
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_RAT (Probable saccharopine dehydrogenase OS=Rattus norvegicus GN=Sccpdh PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.680e-24
Identity = 77/203 (37.93%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  104 WAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPK-GGVFPPGIVFGATELPQRLPENGISFDV 709
            +AI  L +D +VV+RT   L EN        +SP Q     A + TV      +KL    L                        LL+KFP +FS G+F KRGP++ +++ +SF M F G G+S    VS    KP++ I T+V GPE GY+ATPI ++Q A+  L+    LPK GGVF PG  F  T+L  RL ++GI F V
Sbjct:  244 YAIPFLGSDMSVVKRTQRYLHEN------LEDSPVQY----AAYITVGGITSVIKLMFAGLF-----------FLFFVKFSIGRQLLVKFPWLFSFGYFSKRGPTQKQMDESSFTMTFFGQGYSHG--VSAEKNKPNIRICTQVKGPEAGYVATPIAMVQAAVTFLNDASDLPKGGGVFTPGAAFSRTKLIDRLNQHGIQFSV 423          
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_MOUSE (Probable saccharopine dehydrogenase OS=Mus musculus GN=Sccpdh PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 75/203 (36.95%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  104 WAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPK-GGVFPPGIVFGATELPQRLPENGISFDV 709
            ++I  L +D +VV+RT   L EN        +SP Q     A + TV      +KL    L                        LL+KFP +FS G+F K+GP++ +++  SF M F G G+S  + V +   KP++ I T+V GPE GY+ATPI ++Q A+  LS    LPK GGVF PG  F  T+L  RL ++GI F V
Sbjct:  244 YSIPFLGSDISVVKRTQRYLHEN------LEDSPVQY----AAYVTVGGITSVIKLMFAGLF-----------FLFFVKFSIGRQLLIKFPWLFSFGYFSKQGPTQKQMDETSFTMTFFGQGYSHGTCVEKN--KPNIRICTQVKGPEAGYVATPIAMVQAAMTFLSDASDLPKGGGVFTPGAAFSRTKLIDRLNKHGIEFSV 423          
BLAST of EY702436 vs. ExPASy Swiss-Prot
Match: SCPDH_BOVIN (Probable saccharopine dehydrogenase OS=Bos taurus GN=SCCPDH PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 78/226 (34.51%), Postives = 112/226 (49.56%), Query Frame = 2
Query:   53 PAPLRGPLVESH------NTIGLWAIKLLSADATVVRRTLSILTENPHGLPGANESPEQREKREAFWSTVKPAHFGVKLGSKSLLDXXXXXXXXXXXXXXXXXXXXXWLLLKFPSIFSLGWFRKRGPSEDEVESASFKMWFIGHGFSDSSLVSQGNAKPDMEIITRVTGPEIGYIATPIILMQCALIVLSQREILPK-GGVFPPGIVFGATELPQRLPENGISFDV 709
            P P+ GP ++          +  ++I  L AD +VV+RT   L EN           EQ   + A +  V      +KL    L                        LL+KF  +FS G+F K+GP++ +++++SF M F G GFS    VS    KP++ I T+V GPE GY++T I ++Q A+I+L+    LPK GGVF PG  F  T+L  RL E+GI F V
Sbjct:  221 PVPIVGPKLKRRWPISYCRELNSYSIPFLGADVSVVKRTQRYLHENL----------EQSPVQYAAYINVGGITSVIKLMFAGLF-----------FLFFVRFGIGRQLLIKFTWLFSFGYFSKQGPTQKQIDASSFTMTFFGQGFSQG--VSPVKNKPNIRICTQVKGPEAGYVSTSIAMVQAAMILLNDASDLPKAGGVFTPGAAFSRTKLIDRLNEHGIEFSV 423          
The following BLAST results are available for this feature:
BLAST of EY702436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SCPDH_ARATH1.096e-8162.71Probable mitochondrial saccharopine dehydrogenase ... [more]
SCPDH_PONAB2.481e-2535.40Probable saccharopine dehydrogenase OS=Pongo abeli... [more]
SCPDH_HUMAN3.241e-2535.84Probable saccharopine dehydrogenase OS=Homo sapien... [more]
SCPDH_RAT4.680e-2437.93Probable saccharopine dehydrogenase OS=Rattus norv... [more]
SCPDH_MOUSE7.982e-2436.95Probable saccharopine dehydrogenase OS=Mus musculu... [more]
SCPDH_BOVIN7.982e-2434.51Probable saccharopine dehydrogenase OS=Bos taurus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-H10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702436 ID=EY702436; Name=EY702436; organism=Citrus sinensis; type=EST; length=925bp
CTTTCAACAACCCCGCGTCCGGACCCAGGATTCCAGGACAGTGATTCCTG
GTCCAGCTCCTCTAAGAGGGCCATTGGTAGAAAGCCATAACACGATTGGC
CTTTGGGCTATAAAGTTACTTTCGGCAGATGCTACTGTTGTCCGAAGAAC
TCTTTCAATTTTAACAGAAAACCCTCATGGTCTTCCTGGGGCCAACGAGA
GTCCTGAACAGAGAGAAAAACGAGAGGCTTTTTGGTCAACTGTGAAGCCA
GCTCATTTTGGGGTAAAATTAGGATCTAAATCTTTGTTAGACATCTTTAG
ATTCATCATACTTGGGATATCCATTGGGCTCTTAAGTGGACTTTCCTTTG
GGAGGTGGCTTCTCTTAAAATTTCCTTCAATTTTCAGCCTTGGATGGTTC
AGGAAGAGGGGCCCCTCTGAAGATGAGGTTGAAAGTGCTTCATTTAAAAT
GTGGTTTATCGGACATGGCTTTAGTGACAGCAGTCTTGTTTCACAAGGGA
ATGCCAAACCTGACATGGAAATAATAACACGAGTTACGGGACCTGAGATT
GGTTATATAGCCACTCCAATAATACTTATGCAGTGTGCTCTTATTGTCTT
GAGCCAACGTGAAATTCTACCCAAGGGAGGAGTTTTTCCACCAGGAATTG
TCTTTGGTGCAACAGAGCTTCCACAAAGACTACCAGAGAATGGAATATCT
TTTGATGTATTTCCAAGAGTTCCCTTCCTGCCCTAACGGGTGTAGCTTTC
CTTTCCCGGAAACAGAGAACTTTGAACTTTTATCCTACAACCTCCATAAA
TAATATATGGAAAATTCTTGCCAAATCTTGTCATAACTTTGATGAGGACA
NTGGTGATTAACAAACAAAAAAAAAAGGCCGCCGCTTCTAAGGACTCAAC
TTACCTTACCCGGCATGGCAACTTA
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