EY702410

Overview
NameEY702410
Unique NameEY702410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702410_ssr112 microsatellite EY702410_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.366e-113
Identity = 195/219 (89.04%), Postives = 206/219 (94.06%), Query Frame = 1
Query:  145 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYL FIVRDV+VNPNPDEVA+ KYV R+Q+KELLRKADAGEEGLKLSPW RLVVD+FLFKWWDH +K
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEK 219          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 4.461e-112
Identity = 198/258 (76.74%), Postives = 216/258 (83.72%), Query Frame = 1
Query:   28 LFLSSSHFAPRVSSIXXXXXXXXXXXXXXXXXXXXXXXTMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            +F SSSH + RVSS                         MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYL FI+RDV+V+PNPDEVA+ KYVN++Q+K+LLRK DAGEEGLKLSPW RLVV++FLFKWWDH +K
Sbjct:   48 VFCSSSHLSVRVSSYHSSVAAKATTS------------AMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEK 293          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 2.448e-110
Identity = 192/225 (85.33%), Postives = 207/225 (92.00%), Query Frame = 1
Query:  157 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQKDP-*QVIDMR 828
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYL FIVRDV V PNPDEVAE KYV+RE++KEL++KADAGEEGLKLSPW RLVVD+FL KWWDH +K    + IDM+
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMK 279          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 395.586 bits (1015), Expect = 2.072e-109
Identity = 189/220 (85.91%), Postives = 205/220 (93.18%), Query Frame = 1
Query:  142 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYL FI+RDV+++PNPDEVAE KY+NR+ +KELLRKADA EEG+KLSPW RLVVD+FLFKWWDH +K
Sbjct:   54 TMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEK 272          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 7.875e-109
Identity = 191/219 (87.21%), Postives = 205/219 (93.61%), Query Frame = 1
Query:  145 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYL FIVRDV+V+PNPDEVAE KYVNREQ+KELL+KADAGEEGLKLSPW RLVVD+FL KWWDH +K
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEK 271          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.343e-108
Identity = 188/219 (85.84%), Postives = 203/219 (92.69%), Query Frame = 1
Query:  145 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYL FIVRDV ++PNPDEVA+ KYVNREQ+KELLRKADAGEEGLKLSPW RLVVD+FL KWWDH +K
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEK 275          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 392.119 bits (1006), Expect = 2.291e-108
Identity = 185/215 (86.05%), Postives = 200/215 (93.02%), Query Frame = 1
Query:  157 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDHPQK 801
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYL FIVRDV + PNPDEVAE KYV+RE++KEL++KADAG+E +KLSPW RLVVD+FL KWWDH +K
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEK 218          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 7.222e-62
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 1
Query:  145 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDH 792
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+ F+ ++V++NP+P+E+  + YV++E++KELL+KA  GE  +K++PW +++ + FLFKWWD+
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDN 211          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.232e-61
Identity = 117/207 (56.52%), Postives = 155/207 (74.88%), Query Frame = 1
Query:  172 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDH 792
            +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+  + ++V++NP+P+E+  Y YV++E++KELL+KA +GE  +K++PW +++   FLFKWWD+
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDN 211          
BLAST of EY702410 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.609e-61
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 1
Query:  145 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLFFIVRDVSVNPNPDEVAEYKYVNREQVKELLRKADAGEEGLKLSPWVRLVVDHFLFKWWDH 792
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+  + ++V++NP+P+E+  Y YV +E+++EL+ KA  GE  +K++PW +++ D FLFKWWD+
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDN 211          
The following BLAST results are available for this feature:
BLAST of EY702410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
IDI1_CAMAC2.366e-11389.04Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CAMAC4.461e-11276.74Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_ARATH2.448e-11085.33Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CLABR2.072e-10985.91Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI2_CLABR7.875e-10987.21Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.343e-10885.84Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_ARATH2.291e-10886.05Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_MACFA7.222e-6255.56Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN1.232e-6156.52Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_BOVIN1.609e-6156.02Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-F08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702410 ID=EY702410; Name=EY702410; organism=Citrus sinensis; type=EST; length=908bp
TTCGTCGACCCACGCGTCCGGTCCCGTCTATTTCTCTCCTCTTCCCATTT
CGCCCCTAGGGTTTCTTCGATTCGCAGGCCTCTGTCCTTGAGAGGTGCCT
CTCGTTCTAGCTCTTCTTCTTCTTCCGCTCGCGCAATCAGCACTATGGGT
GACGCTACTACTGATGCCGGCATGGACGCTGTCCAGCGCCGCCTCATGTT
TGAAGACGAATGCATTTTGGTGGATGAGAATGATCGCGTTGTTGGTCATG
AAAACAAATACAACTGTCACTTGATGGAAAAGATTGAGTCTTTGAATTTG
CTACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATGAGCTACT
CCTTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTGTGGACTA
ACACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGAGGAG
AACGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGGATGAGCT
GGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCACTGGGTC
GCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCATGAACTT
GACTACTTATTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGA
TGAAGTAGCCGAGTATAAATATGTCAACCGGGAACAGGTAAAAGAGCTTT
TGAGGAAAGCAGATGCTGGAGAAGAAGGGTTGAAGCTGTCTCCTTGGGTC
AGACTGGTTGTGGACCATTTCTTGTTCAAGTGGTGGGATCACCCCCAAAA
GGACCCTTAACAAGTCATTGACATGAGACCATCCCAAGTTGACTTATAAA
GCCGCAGGCCTTGAACCCAGTATTTGGTGGCGGGACCTGGATTCCATAGG
TTGGGCAT
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