EY702408

Overview
NameEY702408
Unique NameEY702408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12275 contig Csv1_Contig12275:2..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702408 vs. ExPASy Swiss-Prot
Match: C3H12_ARATH (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.502e-32
Identity = 72/140 (51.43%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  484 YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDY-------PDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNFKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRXXXXXXEXVAAHEEGRA 879
            + RDS  +VVH+I   N  P++W PN  DS+VWATEDDY       PD+    +N     +TR +    P+  S   +   + ++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++EELRR      E VAAHEE R+
Sbjct:    4 HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDYNRAWAMNPDNTSGDNNGPPNKKTRGS----PSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERS 139          
BLAST of EY702408 vs. ExPASy Swiss-Prot
Match: C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.241e-27
Identity = 67/130 (51.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  505 NVVHIIVGNGAPEHWI---PNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPP-NKKSRNGSQDVN----FKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRXXXXXXEXVAAHEE 870
            N +HII     P+ W        D+ +WATEDDY     +       S  R+ SEQPP  KKSR G          KS+AIGKMFFKTKLCCKFR GTCPY+TNCNFAH +EELR+      E VAAHEE
Sbjct:    5 NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDYNSQWNADGGGGGSS--RAGSEQPPPGKKSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEE 132          
BLAST of EY702408 vs. ExPASy Swiss-Prot
Match: C3H28_ARATH (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  478 MSYSRDSSENVVHI-IVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNFKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELR 825
            MS+ RD   + VH+ I  +  PE+  PN  DSSVWATEDDY          +      S+  + P+KK+R+ S      S  IGK FFKTKLC KFR GTCPY  ++C+FAHS EELR
Sbjct:    1 MSHRRDYGSDAVHVRITHDPPPENCFPNSGDSSVWATEDDY----------SRVWAINSDGAESPSKKTRSSS------SSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102          
The following BLAST results are available for this feature:
BLAST of EY702408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C3H12_ARATH1.502e-3251.43Zinc finger CCCH domain-containing protein 12 OS=A... [more]
C3H56_ORYSJ3.241e-2751.54Zinc finger CCCH domain-containing protein 56 OS=O... [more]
C3H28_ARATH3.248e-1947.46Zinc finger CCCH domain-containing protein 28 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-F06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702408 ID=EY702408; Name=EY702408; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGGTAGCCATGCGAATGAACCAAATCTATCTCTAAATTTGA
AACCATTTCCTTTTAACTTTGATTTTTCCTCACTCTAGTAATTCTCCCAA
GCCTGTAAATACAATTTTTTTTTGCTTTTTGCTATTTTTTTTTTGGATCA
TATATTGAAATGATTGAGGAGTGGATCTAATCCCTTCTACATCTTTGTAT
CATTCTCTTTCATTTTTCTAAATTTAAGAATTAAATTATTTTTAGTATCA
ATTTGGTTTTGTAATGTTGTTGCTGTCAGTTTGAAGATTTCATTTCTTCA
TGATCTCGATCAAATATCTTTTGCTAAACGACAGTATGATTCGTAATTGA
AATATCAACCTTTCTCAAAATCTTAAAATTTCAGTTTTTGCTTATATCTT
TCCTCTTCAATTGTCCTCAAAACTAGACAATTTCAGCTTCTGGTAGTTTA
CAGAATACAAGTTAGGGTTTTGCTGTAATGAGTTACAGTCGAGATTCAAG
TGAAAACGTGGTTCACATCATTGTGGGAAATGGAGCACCAGAGCACTGGA
TTCCAAATCCTAACGATTCATCTGTTTGGGCAACTGAAGACGATTACCCA
GATGACCCTCCTTCAATCTCCAATTCCAACTGTCAGTCCCAAACAAGGTC
AAACAGCGAGCAACCACCAAATAAGAAGTCAAGAAACGGCTCCCAAGATG
TGAATTTCAAGTCAAAAGCAATTGGCAAAATGTTTTTCAAGACAAAGCTA
TGTTGCAAGTTTCGCAATGGAACCTGCCCTTATATAACTAACTGCAACTT
TGCGCACAGCATTGAAGAGCTTCGTCGACCGCCTCCTAATTGNCANGAAN
TAGTAGCAGCTCATGAAGAAGGAAGAGCGAGTAC
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