EY702388

Overview
NameEY702388
Unique NameEY702388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length985
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_SOLCE (DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.425e-68
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = 3
Query:  132 IITHEKEKVTGLKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            +ITHEKEKVTGLKIELLGETSIASTIS LDNA V+IGSSYGDSQL+KLNLQPD KGSYVEVLERYVNLGPIV FCVVDLERQGQGQVVTCSG Y DGS RIVRNGIGINE AS+ELQGIK MWSLRS+TDDP+DT L
Sbjct:  286 VITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFL 422          

HSP 2 Score: 38.891 bits (89), Expect = 1.425e-68
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  538 FSEVKFISDTPILAMNLDDEL*QTDIYGFLFSHPDLCFGHD 660
            F  V FIS+T +LAMNL+DEL +T+I GF  S     F HD
Sbjct:  421 FLVVSFISETRVLAMNLEDELEETEIEGF-NSQVQTLFCHD 460          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_SOLLC (DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.425e-68
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = 3
Query:  132 IITHEKEKVTGLKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            +ITHEKEKVTGLKIELLGETSIASTIS LDNA V+IGSSYGDSQL+KLNLQPD KGSYVEVLERYVNLGPIV FCVVDLERQGQGQVVTCSG Y DGS RIVRNGIGINE AS+ELQGIK MWSLRS+TDDP+DT L
Sbjct:  281 VITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFL 417          

HSP 2 Score: 38.891 bits (89), Expect = 1.425e-68
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  538 FSEVKFISDTPILAMNLDDEL*QTDIYGFLFSHPDLCFGHD 660
            F  V FIS+T +LAMNL+DEL +T+I GF  S     F HD
Sbjct:  416 FLVVSFISETRVLAMNLEDELEETEIEGF-NSQVQTLFCHD 455          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1B_ARATH (DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.192e-67
Identity = 118/137 (86.13%), Postives = 127/137 (92.70%), Query Frame = 3
Query:  132 IITHEKEKVTGLKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            +ITHEKEKVTGLKIELLGETSIAS+IS LDNAVV++GSSYGDSQLIKLNLQPDAKGSYVE+LE+YVNLGPIV FCVVDLERQGQGQVVTCSG Y DGS RIVRNGIGINE AS+ELQGIK MWSL+SS D+ FDT L
Sbjct:  281 VITHEKEKVTGLKIELLGETSIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFL 417          

HSP 2 Score: 41.2022 bits (95), Expect = 1.192e-67
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1
Query:  538 FSEVKFISDTPILAMNLDDEL*QTDIYGFLFSHPDLCFGHD 660
            F  V FIS+T ILAMN++DEL +T+I GFL S     F HD
Sbjct:  416 FLVVSFISETRILAMNIEDELEETEIEGFL-SEVQTLFCHD 455          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1A_ARATH (DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.026e-67
Identity = 116/137 (84.67%), Postives = 126/137 (91.97%), Query Frame = 3
Query:  132 IITHEKEKVTGLKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            +ITHEKEKVTGLKIELLGETSIASTIS LDNAVV++GSSYGDSQL+KLNL PDAKGSYVEVLERY+NLGPIV FCVVDLERQGQGQVVTCSG + DGS R+VRNGIGINE AS+ELQGIK MWSL+SS D+ FDT L
Sbjct:  281 VITHEKEKVTGLKIELLGETSIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFL 417          

HSP 2 Score: 41.9726 bits (97), Expect = 2.026e-67
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:  538 FSEVKFISDTPILAMNLDDEL*QTDIYGFLFSHPDLCFGHD 660
            F  V FIS+T ILAMNL+DEL +T+I GFL S     F HD
Sbjct:  416 FLVVSFISETRILAMNLEDELEETEIEGFL-SQVQTLFCHD 455          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_CHICK (DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.946e-39
Identity = 77/126 (61.11%), Postives = 99/126 (78.57%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LRS +    D +L
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNML 425          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_XENLA (DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.542e-39
Identity = 108/256 (42.19%), Postives = 144/256 (56.25%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTD-DPFDTLLGG*VYQR--YTYFGNES*R*TLTN*HLWFPVLPPRPLFWP*RSLPSSLCQLRHGSARLVRTNLQGAGKMNGKSPSPLSQSMVATSKCQPRLS*PPRRGSLFFFLNLCARDLVQI*IFLCGEYEYSWLCL 923
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KL  + + +GSYV V+E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LR + D D  DTL+   V Q    T  G E     L         +  +  F+        L Q+   S RLV  N Q       K P     S+ + +  Q  L+     G + ++L +   +L Q     C E E+   CL
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVEETDLAG------FVDDQQTFFCGNVAHQQLIQITSASVRLVSQNPQNL-VSEWKEPQGRKVSVCSCNSRQVLLA----VGRVLYYLEIHPGELRQT---SCTEMEHEVACL 541          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_PONAB (DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.659e-39
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LRS  +   D  L
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTL 425          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_HUMAN (DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.659e-39
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LRS  +   D  L
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTL 425          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_CERAE (DNA damage-binding protein 1 OS=Cercopithecus aethiops GN=DDB1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.659e-39
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LRS  +   D  L
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTL 425          
BLAST of EY702388 vs. ExPASy Swiss-Prot
Match: DDB1_BOVIN (DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.659e-39
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 3
Query:  165 LKIELLGETSIASTISCLDNAVVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVHFCVVDLERQGQGQVVTCSGPYNDGSRRIVRNGIGINEHASLELQGIK*MWSLRSSTDDPFDTLL 542
            L++ELLGETSIA  ++ LDN VV++GS  GDSQL+KLN+  + +GSYV  +E + NLGPIV  CVVDLERQGQGQ+VTCSG + +GS RI+RNGIGI+EHAS++L GIK +W LRS  +   D  L
Sbjct:  300 LRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTL 425          
The following BLAST results are available for this feature:
BLAST of EY702388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DDB1_SOLCE1.425e-6888.32DNA damage-binding protein 1 OS=Solanum cheesmanii... [more]
DDB1_SOLLC1.425e-6888.32DNA damage-binding protein 1 OS=Solanum lycopersic... [more]
DDB1B_ARATH1.192e-6786.13DNA damage-binding protein 1b OS=Arabidopsis thali... [more]
DDB1A_ARATH2.026e-6784.67DNA damage-binding protein 1a OS=Arabidopsis thali... [more]
DDB1_CHICK1.946e-3961.11DNA damage-binding protein 1 OS=Gallus gallus GN=D... [more]
DDB1_XENLA2.542e-3942.19DNA damage-binding protein 1 OS=Xenopus laevis GN=... [more]
DDB1_PONAB9.659e-3961.11DNA damage-binding protein 1 OS=Pongo abelii GN=DD... [more]
DDB1_HUMAN9.659e-3961.11DNA damage-binding protein 1 OS=Homo sapiens GN=DD... [more]
DDB1_CERAE9.659e-3961.11DNA damage-binding protein 1 OS=Cercopithecus aeth... [more]
DDB1_BOVIN9.659e-3961.11DNA damage-binding protein 1 OS=Bos taurus GN=DDB1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-D10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702388 ID=EY702388; Name=EY702388; organism=Citrus sinensis; type=EST; length=985bp
GGNNNNNNGTGGGGGGGGGGGGGGGGGTGTTTTNTTTNAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCCCTCGACCACGCGTCCGGATATTTACT
CTCCGATCATGCTGGGCTTCTTCACCTCCTCATCATAACCCATGAGAAAG
AAAAGGTTACTGGACTCAAAATTGAGCTTTTGGGCGAAACTTCTATAGCA
TCTACTATATCATGTCTGGATAATGCGGTTGTGTATATTGGCTCAAGCTA
TGGAGATTCACAGCTTATAAAACTAAATCTACAACCCGATGCAAAAGGTT
CATATGTTGAAGTTTTGGAAAGATATGTCAATTTGGGGCCAATTGTCCAC
TTCTGTGTGGTTGACCTTGAGAGGCAAGGCCAAGGTCAGGTTGTAACCTG
TTCTGGACCTTACAATGATGGCTCTCGCCGTATAGTTCGAAATGGAATTG
GAATTAATGAGCACGCATCATTGGAATTGCAAGGCATTAAATGAATGTGG
TCACTAAGATCATCTACAGATGATCCATTTGATACCCTTCTCGGAGGTTA
AGTTTATCAGCGATACACCTATTTTGGCAATGAATCTTGACGATGAACTT
TAACAAACTGACATTTATGGTTTCCTGTTCTCCCACCCAGACCTTTGTTT
TGGCCATGACGTTCCCTCCCATCTTCCTTGTGCCAGCTACGTCACGGCTC
TGCAAGACTTGTTCGGACCAACCTCCAGGGAGCTGGCAAAATGAATGGGA
AATCTCCCTCCCCGCTATCCCAATCAATGGTTGCAACCTCCAAATGCCAA
CCAAGGCTTTCCTAACCACCTCGCCGTGGTTCATTATTTTTTTTCCTCAA
TCTTTGCGCACGTGATCTTGTACAAATATAAATTTTTCTCTGCGGGGAGT
ATGAATATTCCTGGCTTTGTCTTTCCTCCCCGCGGGCAAATTCCCTCCTC
ATCCTCTAACACCTGCCGTCTGGCCTGTGCGCCAC
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