EY702369

Overview
NameEY702369
Unique NameEY702369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.029e-84
Identity = 142/182 (78.02%), Postives = 152/182 (83.52%), Query Frame = 3
Query:   30 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELGR 572
            MA  TQASLF PA  S  KSSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREG NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHP+DGVYPEKV   R+ +G+
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQ 180          

HSP 2 Score: 59.3066 bits (142), Expect = 4.029e-84
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 2
Query:  551 GKEGVGQNYRSIGKNVSPIEVKFTGKQMYDL 643
            G++GVGQN+RSIGKN SPIEVKFTGKQ+YDL
Sbjct:  174 GRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.744e-83
Identity = 138/187 (73.80%), Postives = 151/187 (80.75%), Query Frame = 3
Query:   30 MAATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELGR 572
            MA  TQA+LF P+  ST KS   S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHP+DGVYPEKV P R+ +G+
Sbjct:    1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQ 183          

HSP 2 Score: 65.855 bits (159), Expect = 5.744e-83
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 2
Query:  545 DPGKEGVGQNYRSIGKNVSPIEVKFTGKQMYDL 643
            +PG+EGVGQN+RSIGKNVSPIEVKFTGKQ+YDL
Sbjct:  175 NPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.275e-82
Identity = 139/184 (75.54%), Postives = 149/184 (80.98%), Query Frame = 3
Query:   30 MAATTQASLFAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELGR 572
            MA  TQASLF P       ++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHP+DGVYPEKV P R+ +G+
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQ 184          

HSP 2 Score: 59.6918 bits (143), Expect = 1.275e-82
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 2
Query:  545 DPGKEGVGQNYRSIGKNVSPIEVKFTGKQMYDL 643
            +PG+EGVGQN+RSIGKN S IEVKFTGKQ+YD+
Sbjct:  176 NPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 4.407e-80
Identity = 138/190 (72.63%), Postives = 156/190 (82.11%), Query Frame = 3
Query:   30 MAATTQASLFAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELG 569
            MA  TQA+LF+P++ S+     T+ +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHP+DGVYPEKV P R+ +G
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVG 187          

HSP 2 Score: 59.3066 bits (142), Expect = 4.407e-80
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 2
Query:  545 DPGKEGVGQNYRSIGKNVSPIEVKFTGKQMYDL 643
            +PG++GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  180 NPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.062e-69
Identity = 124/188 (65.96%), Postives = 135/188 (71.81%), Query Frame = 3
Query:   30 MAATTQASL----FAPANFSTTKSSAPWKQSSSFSVR---PLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELGR 572
            MA  TQAS        A +S +    P   +   S R   PL   AP T    A        P + AP GF PP+LDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAIMREGPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHP+DGVYPEKV   R+ +G+
Sbjct:    1 MAMATQASAATRHLITAAWSPSAKPRPATLAMPSSARGPAPLFAAAPDTPAPAA-------PPAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQ 181          

HSP 2 Score: 56.6102 bits (135), Expect = 1.062e-69
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 2
Query:  551 GKEGVGQNYRSIGKNVSPIEVKFTGKQMYDL 643
            G++GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:  175 GRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.315e-65
Identity = 128/179 (71.51%), Postives = 139/179 (77.65%), Query Frame = 3
Query:   36 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELG 569
            AT  A +F+PA  +TT S+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHP+DGVYPEK  P R+ +G
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVG 179          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.497e-63
Identity = 128/184 (69.57%), Postives = 138/184 (75.00%), Query Frame = 3
Query:   36 ATTQASLFAPANFSTTKSSAPWKQSSSFSV--RP----LKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELG 569
            AT  A +F  A   TT +++  K+   FS   RP        A R     + A       TKEAPVGFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHP+DGVYPEK  P R+ +G
Sbjct:    2 ATQAAGIFNSA--ITTAATSGVKKLHFFSTTHRPKSLSFTKTAIRAEKTDSSAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVG 183          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 9.248e-53
Identity = 99/160 (61.88%), Postives = 118/160 (73.75%), Query Frame = 3
Query:   81 TKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPV-GFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPQDGVYPEKVTPER 557
            T++ A  + SS  +V   +  A R   ++A AE       K A    +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMR+GPNLLK  +KEQCLAL T+LR+K+K+   FYRVFP+G+VQYLHP DGVYPEKV   R
Sbjct:    7 TQAPAATRASSRVAVAA-RPAARRAVVVRAEAEAAPAAAKKAAEKPAWTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGR 165          

HSP 2 Score: 40.817 bits (94), Expect = 9.248e-53
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 2
Query:  551 GKEGVGQNYRSIGKNVSPIEVKFTGKQMYDLEI 649
            G+ G  QN R IG+NV+PI+VKF+G+ M   EI
Sbjct:  164 GRVGANQNMRRIGQNVNPIKVKFSGRMMSPAEI 196          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.162e-46
Identity = 93/176 (52.84%), Postives = 116/176 (65.91%), Query Frame = 3
Query:   75 STTKSSAPWKQSSSF------SVRPLKHNAPRTNTIKAMAEGKTETPTKE----APVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELG 569
            S T SSA   Q  +F      + +     AP    ++A  E        E    AP  F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAIMR G NLL+LARKEQC+ALG +L+ K+KI  Y+ YRV+P+GEVQ+LHP+DGV+PEKV P R  +G
Sbjct:   16 SATLSSAVCAQKKAFFGAQVAAKKTTFEAAPARFIVRAEEEEAAPAEKVEKKAAAPKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVAVG 191          

HSP 2 Score: 36.965 bits (84), Expect = 1.162e-46
Identity = 14/35 (40.00%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  545 DPGKEGVGQNYRSIGKNVSPIEVKFTGKQMYDLEI 649
            +PG+  VG N R IG+N  P ++KF G++ +D ++
Sbjct:  184 NPGRVAVGSNKRRIGQNPDPAKLKFKGQETFDSDL 218          
BLAST of EY702369 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.761e-41
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  225 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPQDGVYPEKVTPERKELGRI 575
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHP+DGV+PEKV   R  +  +
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSV 119          

HSP 2 Score: 35.8094 bits (81), Expect = 1.761e-41
Identity = 16/30 (53.33%), Postives = 19/30 (63.33%), Query Frame = 2
Query:  551 GKEGVGQNYRSIGKNVSPIEVKFTGKQMYD 640
            G+  +     SIGKNV+PI VKFT K  YD
Sbjct:  112 GRASINSVDHSIGKNVNPINVKFTNKATYD 141          
The following BLAST results are available for this feature:
BLAST of EY702369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_NICSY4.029e-8478.02Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA5.744e-8373.80Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC1.275e-8275.54Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL4.407e-8072.63Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU1.062e-6965.96Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH5.315e-6571.51Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH6.497e-6369.57Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_CHLRE9.248e-5361.88Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA1.162e-4652.84Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_PORPU1.761e-4163.56Photosystem I reaction center subunit II OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-C03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702369 ID=EY702369; Name=EY702369; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGCGATCAATAATAATGGCCATGGCCGCAACAACTCAAGCC
TCTCTCTTCGCACCGGCCAACTTCTCCACCACCAAATCCTCTGCGCCGTG
GAAGCAATCATCATCATTTTCAGTAAGGCCACTAAAACATAATGCCCCAC
GTACCAACACCATCAAGGCCATGGCTGAGGGAAAAACAGAGACACCCACA
AAAGAGGCTCCGGTGGGCTTCACCCCACCAGAACTGGACCCCAACACCCC
ATCTCCGATCTTCGGAGGCAGCACCGGCGGGCTGCTGCGGAAGGCTCAGG
TGGAAGAGTTTTATGTGATCACATGGGAGTCTCCTAAGGAGCAAATATTT
GAAATGCCCACTGGGGGTGCGGCCATTATGAGAGAAGGTCCGAATTTGCT
GAAGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGGACAAGGCTGAGGT
CCAAGTACAAGATTAAGTACCAGTTTTACCGAGTGTTTCCCAATGGAGAG
GTTCAGTATTTGCATCCCCAGGATGGTGTTTATCCTGAGAAAGTGACCCC
GGAAAGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGCAAGAATGTGAG
TCCTATTGAAGTCAAGTTTACAGGGAAGCAAATGTATGATCTGGAAATTT
AAATTGAAAGCTGCTAAGCTGACCGGCCTCGGATGAACTGGTGATTAAAT
GTTGGGACCATTAACTTGGTTGAGATCCGGGTTTCTTTTTCCCTAAAATA
TTGGATTGAAACCAGACTTGAACCCTGAAACCATTTTATAATGGCAAAAC
CCCTTTTAAATTAATTGGAAATTTGGCCCCTGTATGGGGAAAACAATTAG
TAACCCGGGGGTTTGCCTCCCCATATAACAATTGCGCCAAAAAAAAAAAA
GAGGG
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