EY702361

Overview
NameEY702361
Unique NameEY702361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY702361 vs. ExPASy Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 60/233 (25.75%), Postives = 106/233 (45.49%), Query Frame = 2 
Query:   89 DDQSNHGNGKGNLDTAKADRSVWLMKCPLVVAKSWQNQASSQDSQPVAKVILSLDPLQSDSMQFTMETTAVSNDSLNRPKSYSLNMFKDFVPMS-VFSESNQGK----VAMEGKVEHKFDMKPHEKNMEEYGRLCRERTNKSMIKNRQIQVIDNDHGVHMRPMPGMVGLISSNSKDK----KRAQPVKQTEVKRTRRDRGELXDIMFKLFERQPNWALSS*SKRLINPRNFLK 760
            ++   + +  G+LD  +    VWL+K P  +   W N     D+  +  V      +++D +Q  ++    S ++ + PK Y+L +   FV  S VF ES         A+ G V H+ ++ P     ++Y R+ ++R   +    R++Q+ID+  G  + P     G + S S+      +  +P     +K +R  R EL DI+FK FE    W L    + +  P  +LK
Sbjct:   11 EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKW-NSIPEDDAANLGCV-----RVKNDEIQLLLQN---SPENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECNVSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP-----GTLGSRSRSTTSFIRNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLK 227
The following BLAST results are available for this feature:
BLAST of EY702361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
T2FB_SCHPO6.781e-1225.75Transcription initiation factor IIF subunit beta O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-B07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702361 ID=EY702361; Name=EY702361; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGGTAAGAAGCTGGAAAGCCACTCAGAGGCAGAGGCAGAGC
CAGAGAAGAAAGAAAAAGGAAAGACTAAAGAGATGGAGGATGATCAAAGT
AACCACGGAAACGGCAAGGGTAATTTGGATACTGCAAAAGCCGATAGATC
GGTTTGGTTAATGAAGTGCCCATTAGTGGTGGCTAAGTCATGGCAAAATC
AAGCTTCTTCTCAAGATTCTCAGCCTGTAGCCAAAGTCATTCTCTCTCTT
GATCCTCTTCAATCCGACAGCATGCAGTTTACTATGGAGACCACGGCGGT
CAGCAATGATAGTCTGAACAGGCCGAAAAGCTATTCATTGAATATGTTCA
AAGACTTTGTTCCAATGTCTGTTTTCTCTGAGTCAAATCAAGGTAAAGTT
GCGATGGAAGGGAAGGTGGAACATAAGTTTGACATGAAGCCTCATGAGAA
AAACATGGAGGAATATGGCAGATTGTGTCGTGAAAGGACAAATAAATCTA
TGATCAAGAATAGACAAATACAGGTTATTGATAATGACCACGGAGTGCAT
ATGAGGCCCATGCCTGGGATGGTTGGGCTAATTTCATCTAACTCTAAGGA
TAAGAAGAGAGCACAACCAGTTAAACAGACAGAAGTGAAAAGAACCAGAA
GGGATCGTGGGGAATTGGANGATATAATGTTCAAGCTATTTGAAAGGCAA
CCAAATTGGGCCTTAAGCAGCTAGTCCAAGAGACTGATCAACCCGCGCAA
TTTTTTGAAGAGATACTGAACGAGCTCTGTGTCTACACAAGAGAGGAACA
ACAAAGGACTTATGAGCTAAAGCGGAATATAAAAATCTGTTGAAGATGGA
GTGCTGATTAAGTCAACTCCATTTGATTAAAATTGGATTGGATGGACTAT
TGA
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