EY683974

Overview
NameEY683974
Unique NameEY683974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHM 139
            FVGDSRSSIFDAKAG ALSKKFVK+V+WYDNEWGYS+RVVDLI HM
Sbjct:  288 FVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHM 333          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGD+RSSIFDAKAG ALS KFVKLVSWYDNEWGYS+RVVDLI HM K
Sbjct:  290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHM 139
            FVGDSRSSIFDAKAG ALSK FVKLVSWYDNEWGYS+RV+DLI HM
Sbjct:  277 FVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHM 322          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGD+RSSIFDAKAG ALS  FVKLVSWYDNEWGYSTRVVDLI HM K
Sbjct:  290 FVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.971e-17
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGDSRSSIFDAKAG AL+  FVKLVSWYDNEWGYS RVVDLI HM K
Sbjct:  288 FVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAK 335          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.971e-17
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHM 139
            FVGDSRSSIFDAKAG AL+  FVKLVSWYDNEWGYSTRVVDLI HM
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHM 333          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.105e-17
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGKNPITFSAVA 172
            FVGD+RSSIFDAKAG  L+  FVKLVSWYDNEWGYS+RVVDLI HM K      +VA
Sbjct:  288 FVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKTTSKLDSVA 344          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGD+RSSIFDAKAG AL+  F+KLVSWYDNEWGYSTRVVDLI H+ K
Sbjct:  288 FVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHK 335          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGDSRSSIFDAKAG AL+  FVKLV+WYDNEWGYS RV+DLI HM K
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAK 335          
BLAST of EY683974 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.553e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGNALSKKFVKLVSWYDNEWGYSTRVVDLIGHMGK 145
            FVGDSRSSIFDAKAG AL+  FVKLV+WYDNEWGYS RV+DLI HM K
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAK 335          
The following BLAST results are available for this feature:
BLAST of EY683974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
G3PC_CRAPL1.405e-1789.13Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.405e-1787.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC2.396e-1789.13Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL2.396e-1787.50Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU6.971e-1785.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA6.971e-1789.13Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU9.105e-1771.93Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_DIACA1.189e-1681.25Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.553e-1681.25Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.553e-1681.25Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-F11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683974 ID=EY683974; Name=EY683974; organism=Citrus sinensis; type=EST; length=366bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTAATG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAATGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGGCCACATGGGGAAAAACCC
AATAACTTTCTCCGCGGTGGCTTGGAGATTTTAAACACGCTTAAATTGTG
CCAAATGGGGGGTGTTTCTTTTGCCCAAAATGGGGGGGGTTTGGGTTTTT
TAAATGTAAAAGGGGGTGAAAATTTTAAAAAAAAAATTTTTTTTCCCAAA
AAAAAATTTATACCAAAAACCCCCTTTCCCTGGCCTTCCTGCGGGGGGGG
TTGTGTTGTTTTAATA
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