EY683921

Overview
NameEY683921
Unique NameEY683921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683921 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.923e-15
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:   92 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 199
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          

HSP 2 Score: 31.5722 bits (70), Expect = 2.923e-15
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = 1
Query:    1 AALGEANADAIQSGNFYG 54
            AALG+ANADAI  G FYG
Sbjct:  420 AALGDANADAIGRGTFYG 437          
BLAST of EY683921 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.787e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   89 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 199
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          

HSP 2 Score: 30.4166 bits (67), Expect = 8.787e-14
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 1
Query:    1 AALGEANADAIQSGNFYG 54
            AALG+AN DAI+ G FYG
Sbjct:  420 AALGDANNDAIKRGTFYG 437          
BLAST of EY683921 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.142e-13
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   92 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 202
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          

HSP 2 Score: 31.5722 bits (70), Expect = 1.142e-13
Identity = 12/18 (66.67%), Postives = 18/18 (100.00%), Query Frame = 1
Query:    1 AALGEANADAIQSGNFYG 54
            AALG+AN+DA+++G+FYG
Sbjct:  411 AALGDANSDAMKTGSFYG 428          
BLAST of EY683921 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.221e-13
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   92 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 205
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          

HSP 2 Score: 28.8758 bits (63), Expect = 4.221e-13
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1
Query:    1 AALGEANADAIQSGNFYG 54
            AALG+AN DAI  G F+G
Sbjct:  418 AALGDANKDAIDRGTFFG 435          
BLAST of EY683921 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.223e-13
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:   92 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 202
            GK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          

HSP 2 Score: 30.8018 bits (68), Expect = 4.223e-13
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 1
Query:    1 AALGEANADAIQSGNFYG 54
            AALG+AN DA+++G+FYG
Sbjct:  410 AALGDANQDAMKTGSFYG 427          
The following BLAST results are available for this feature:
BLAST of EY683921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH2.923e-1583.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.787e-1481.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.142e-1378.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.221e-1373.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU4.223e-1375.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683921 ID=EY683921; Name=EY683921; organism=Citrus sinensis; type=EST; length=477bp
GCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCTA
TGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAGCA
GCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGC
AGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACA
CGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGG
ATGTGAGATATTCAAATAATATTGTTGCATTTTCATTTCTTTGTTAATTA
GAAAGAATCCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATCTTT
AAAAGGTGCTCCTTCTTACCATTATTTACATTTCAAGTATCTAAGAACCT
CTCAAGTATGGATGTCCACACATTTTAAAATGCAAACATAATGTTAGGCT
GCAAATCCAAAAAAAAAAAAAAAAAAA
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