EY702325

Overview
NameEY702325
Unique NameEY702325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 3.491e-96
Identity = 174/198 (87.88%), Postives = 176/198 (88.89%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW          K LVNSK   P+F   KMT+ KLL
Sbjct:  197 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLL 394          

HSP 2 Score: 69.3218 bits (168), Expect = 3.479e-11
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  553 REQPQHFEQPR*QWENCSEYGNMIVAKQKNVKRVHLADKYLNGGALGELMKILFQRENFYGKTAQQMEGPVP*RKY*SHRQKT-LIPLAKSDDG 831
            +E P  FEQP+   +    YG M+V +Q+NVKRV LADKY++  ALG+      +R  FYG  A Q  G VP  +  +  Q T   P A+SDDG
Sbjct:  377 KEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDG 470          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.732e-95
Identity = 182/274 (66.42%), Postives = 199/274 (72.63%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLLR-----VRKHDCCKAKECEESPFG*QIFEWRRSWGTYENPIPKGKFLWQNRPANGRSSSLKEVLIPPAKNFDPTGK 818
            GNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW          K LVNS+   P F   KMT+ KL+      V++ +  K  +  E     Q            + +  G F  Q     G     +    P AKNFDPT +
Sbjct:  188 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAE-----QYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTAR 456          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 5.041e-95
Identity = 171/199 (85.93%), Postives = 176/199 (88.44%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLLR 608
            GNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW          K LVNSK   PTF   KMT+ KLL+
Sbjct:  197 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQ 395          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.622e-93
Identity = 170/198 (85.86%), Postives = 175/198 (88.38%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSK   PTF   KMT+ KLL
Sbjct:  197 GNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLL 394          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.051e-92
Identity = 167/198 (84.34%), Postives = 175/198 (88.38%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW          ++LVNSK + PTF   KMT+ KLL
Sbjct:  194 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLL 391          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.589e-91
Identity = 163/198 (82.32%), Postives = 173/198 (87.37%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+    TF   KMT+ KLL
Sbjct:  187 GNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLL 384          

HSP 2 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  553 REQPQHFEQPR*QWENCSEYGNMIVAKQKNVKRVHLADKYLNGGALGELMKILFQRENFYGKTAQQMEGPVP*RKY*SHRQKTLIPLAKSDDG 831
            R+ P  FEQP+   E   EYG+M+V +Q NVKRV LAD Y++  ALG+  +   +  +FYGK AQQ   PVP         K   P A+SDDG
Sbjct:  367 RDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVP-EGCTDQNAKNYDPTARSDDG 458          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 1.285e-90
Identity = 163/199 (81.91%), Postives = 172/199 (86.43%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLLR 608
            GNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNSK   PTF   KM++ KLL+
Sbjct:  199 GNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQ 397          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.285e-90
Identity = 164/195 (84.10%), Postives = 170/195 (87.18%), Query Frame = 3
Query:   21 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW          K LVNS+   PTF   KMT+ KL+
Sbjct:  187 GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLM 381          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.678e-90
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVRKW          + L+NS+   PTF   KMT+ KLL
Sbjct:  196 GNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLL 393          
BLAST of EY702325 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 332.413 bits (851), Expect = 2.192e-90
Identity = 162/198 (81.82%), Postives = 173/198 (87.37%), Query Frame = 3
Query:   12 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKGAAPTFRATKMTMGKLL 605
            GNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W          + LVNSK   PTF   K+T+ KLL
Sbjct:  193 GNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLL 390          
The following BLAST results are available for this feature:
BLAST of EY702325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR3.491e-9687.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.732e-9566.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR5.041e-9585.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.622e-9385.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.051e-9284.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.589e-9182.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.285e-9081.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.285e-9084.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.678e-9081.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.192e-9081.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-G03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702325 ID=EY702325; Name=EY702325; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGGGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGG
TACCGTGAGGCAGCTGACATTATCAAGAAGGGAAAAATGTGCTGCCTCAT
GATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGT
ACACAGTTAACAACCAAATGGTTAACGCCACACTCATGAACATTGCTGAT
AACCCAACTTGTGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCC
CCGTGTCCCAATCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTC
CTCTCATCCGTGATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGG
GAGGACCGTATTGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGC
TGATGACGACATTGTCAAGCTTGTCGACACCTTCCCCGGCCAATCCATTG
ATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAAG
TGGATCTCTGGTGTTGGTGTTGGGAGCATTGGCAAGAGCCTTGTGAACTC
AAAGGGAGCAGCCCCAACATTTCGAGCAACCAAGATGACAATGGGAAAAC
TGCTCCGAGTACGGAAACATGATTGTTGCAAAGCAAAAGAATGTGAAGAG
AGTCCATTTGGCTGACAAATATTTGAATGGAGGCGCTCTTGGGGAACTTA
TGAAAATCCTATTCCAAAGGGAAAATTTCTATGGCAAAACCGCCCAGCAA
ATGGAAGGTCCAGTTCCCTGAAGGAAGTACTGATCCCACCGGCAAAAAAC
TTTGATCCCACTGGCAAAAAGTGATGATGGGAAACCGCCAATAACCCCTT
TAAGGCCTTGGTTTCCTAAGGGTGAGGAAAGGTCCCACCTTTCTTATGAG
AGGAAAATTTCCAAAAAATATGTT
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