CX077876

Overview
NameCX077876
Unique NameCX077876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077876 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.392e-63
Identity = 131/224 (58.48%), Postives = 156/224 (69.64%), Query Frame = -2 
Query:  114 RAAERSFDRPLATSPTQGQVPSITQNVPSEKVWSEEYLREKSIAAIKEFYSARDEKEVAWCIKDLNSPGFHPSMVSLWVTDSFERKDMERDLLAKLLVNLAKSREGMLSQGQLIKGFESVLTTLEDAVNDAPRAAEFLGRIFAKVVEENVXXXXXXXXXXXXXXXXXXXLQEIGLAGDVLGSTLEIIKSDKGESVLHEVRMSSNLRLEDFRPPEPNRSRILEKF 785
            RA++ S +   A    QG  PS T N P E   SEE L   S++AIKE+YSARDE E+  C+KD+NSP +HP+M+SLWVTDSFERKD ERDLLAKLLVNL KS +  L++ QL+KGFESVL TLEDAVNDAP+AAEFLGRIF K V E V                   L E GL GDVLGS LE+IK++ GE  L E+R SS LR+E+F+P  PNRS+ILEKF
Sbjct: 1503 RASDLSPEVSSARQVLQG--PSATVNSPRENALSEEQLENLSLSAIKEYYSARDENEIGMCMKDMNSPAYHPTMISLWVTDSFERKDKERDLLAKLLVNLVKSADNALNEVQLVKGFESVLKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVLGSVLEMIKTEAGEETLVEIRRSSGLRIENFKPHAPNRSKILEKF 1724
The following BLAST results are available for this feature:
BLAST of CX077876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF4G1_ARATH1.392e-6358.48Eukaryotic translation initiation factor 4G OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5E09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5E09-I17-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077876 ID=CX077876; Name=CX077876; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTAGCATAATAATAATAATAATAACGAGTACCCTA
AAGGCACTAGGGATCAATTTCTTCTATCGAGATACAAATGAGCATCACCT
ATCCCCTCTAAATAAATTTTTCTAGTATTCTTGATCTGTTAGGCTCTGGA
GGCCTGAAATCCTCCAATCTCAAATTCGAGCTCATTCGAACCTCATGTAA
CACACTTTCTCCTTTATCTGATTTAATGATCTCTAATGTGCTTCCAAGAA
CATCACCCGCAAGCCCAATTTCCTGAAGACGCCCAGGTTCCTCTCCACCT
TCACGTAACAACCTCCCAATCTCCCTCAAGGGAATCACATTCTCTTCGAC
AACTTTGGCAAATATACGGCCAAGAAATTCTGCTGCTCTTGGAGCATCAT
TTACTGCATCCTCCAAAGTAGTGAGAACAGATTCAAACCCTTTGATGAGC
TGGCCTTGACTTAACATGCCTTCCCGAGATTTAGCAAGATTCACAAGCAG
CTTAGCCAAAAGATCCCTTTCCATGTCCTTCCTCTCAAAAGAGTCTGTTA
CCCAGAGAGAGACCATTGAAGGGTGGAAACCTGGGGAATTCAAATCTTTG
ATACACCAAGCAACTTCTTTCTCATCCCGGGCACTGTAGAATTCTTTAAT
TGCAGCAATTGACTTCTCCCGTAGGTATTCTTCAGACCACACCTTTTCTG
AAGGAACATTTTGGGTGATGGATGGTACCTGGCCTTGTGTGGGTGAAGTT
GCAAGAGGCCGATCAAAACTTCGCTCAGCAGCCCTTAGGTCTCGGTTA
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