EY702293

Overview
NameEY702293
Unique NameEY702293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702293 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.885e-13
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 3
Query:  540 PLLGDHLNPFGIDTSGGLAAGILNSRSPAFSKRNQSFIQR-NTVNRHSGVSSPNSTAAVMPSKLARLGSP*WKMGMGPSTKRSEKLPESSSF 812
            P++G     FG+D S  +A  I++SR+ AF+KR+QSFI R         + SP +T A  PS L+  GSP  K+  G       KL +S+SF
Sbjct:  465 PMVGGANTAFGLDHS--MAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGA--PSILSDWGSPDGKLDWGVQGDELHKLRKSASF 552          

HSP 2 Score: 46.595 bits (109), Expect = 1.885e-13
Identity = 32/109 (29.36%), Postives = 53/109 (48.62%), Query Frame = 2
Query:  137 IAPPTLQLPGSRLKSARNARDMEFDMELLGLENRRRQQQLIDEISSLSSP-SGWXXXXXXXXXXXXXXDRTGDMNRIGGVKPT----NLDDIFGSLNPTLMPQLQGTSL 448
            ++P     P SRLK+A  AR+++FD+E+L L+  + QQ+L D++S   SP + W                    N +    P     +  D+ GS++P ++ QL   SL
Sbjct:  351 MSPAWPSSPASRLKTALGARELDFDLEMLALD--QYQQKLFDKVSGAPSPRASWG----------------AAANGLATASPARAVPDYTDLLGSVDPAMLSQLHALSL 441          
BLAST of EY702293 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 5.629e-12
Identity = 39/115 (33.91%), Postives = 52/115 (45.22%), Query Frame = 2
Query:  110 GGTMWNQPN-IAPPTLQLPGSRLKSARNARDMEFDMEL--LGLENRRRQQQLIDEISSLSSPSGWXXXXXXXXXXXXXXDRTGDMNRIGGVKPTNLDDIFGSLNPTLMPQLQGTS 445
            GG   N+ N + PP LQL GSRLKS  +ARDM+ +MEL   GL+NR                                        R+G +KP+NL++ FGS +   + QLQ  S
Sbjct:  366 GGLWQNRVNSLTPPPLQLNGSRLKSTLSARDMDMEMELRFRGLDNR----------------------------------------RLGDLKPSNLEETFGSYDSASVMQLQSPS 440          

HSP 2 Score: 40.0466 bits (92), Expect = 5.629e-12
Identity = 27/85 (31.76%), Postives = 40/85 (47.06%), Query Frame = 3
Query:  564 PFGIDTSGGLAAGILNSRSPAFSKRNQSFIQRNTVNRHSGVSSPNSTAAVMPSKLARLGSP*WKMGMGPSTKRSEKLPESSSFWI 818
            P G ++S  +AA ++N+RS AF+KR+ SF                   A + S ++  GSP  K+  G       KL  S+SF I
Sbjct:  458 PHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGI 525          
The following BLAST results are available for this feature:
BLAST of EY702293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H33_ORYSJ1.885e-1339.13Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H29_ARATH5.629e-1233.91Zinc finger CCCH domain-containing protein 29 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-D02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702293 ID=EY702293; Name=EY702293; organism=Citrus sinensis; type=EST; length=845bp
CCACGCGTCCGTGTTGTCAATAAGCCCGCTTGCTCTTGGTTCTCCATCAG
CTATGATACCACCTACTTCAACACCTCCCTTGACTCCCTCTGGGGCCTCG
TCTCCTATGGGTGGAACCATGTGGAACCAGCCTAATATTGCCCCTCCTAC
ATTGCAGCTTCCTGGTAGCAGGCTGAAATCTGCACGTAATGCTAGAGACA
TGGAATTTGACATGGAATTACTCGGGCTAGAAAATCGACGTAGACAACAA
CAGTTAATTGATGAGATATCAAGTCTCTCGTCACCATCTGGCTGGGCCAA
TTCCTTGTCTTCGGCAGCACCCTTTTCTTCCTCTGCTGATCGAACTGGGG
ATATGAATAGGATTGGTGGAGTGAAACCAACTAACCTTGATGATATTTTT
GGATCTCTTAATCCTACACTTATGCCTCAATTGCAGGGAACCTCATTGGA
TGCATCGGCATCCCAGTTGCAGAGTCCTACAGGCATCCAAATGCGACAGA
ACATGAACCAGCAGCTTCGCTCTAGCTACCCTGCATCTTCCTCTCCTGGG
AGACCATCTCAATCCCTTTGGGATTGATACCTCTGGGGGCCTTGCAGCTG
GCATTTTGAATTCTAGATCACCTGCCTTTTCAAAGCGGAATCAGAGCTTC
ATCCAGCGAAATACTGTCAATCGTCATTCTGGGGTTTCTTCACCAAATTC
AACAGCTGCTGTAATGCCCTCTAAACTGGCTCGATTGGGGTCCCCCTAAT
GGAAAATGGGAATGGGGCCGTCCACCAAAAGATCTGAAAAACTTCCGGAA
TCCTCCTCCTTTTGGATTTAAAAACAATGGGGGGGATGTGGGCAA
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