EY702284

Overview
NameEY702284
Unique NameEY702284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11170 contig Csv1_Contig11170:296..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNJA (Elongation factor Ts OS=Synechococcus sp. (strain JA-3-3Ab) GN=tsf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.953e-28
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAAKPIAKEQPAPAETKETVEKPPAVAVS 354
            KEDL SKPE +R KIV+GRI KRL+EL+L++QP+IK+  + V++ VKQ IA +GENI+V+RF R+ LGEG+EK+  DFAAEVAAQ   KP       PA+  E    PPA  V+
Sbjct:  130 KEDLASKPENVREKIVQGRIEKRLKELSLMDQPFIKDSSITVEELVKQHIAKLGENIRVRRFARFVLGEGIEKQEADFAAEVAAQAGLKP-----AQPAQVAEVAAAPPAEPVA 238

HSP 2 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIP-DSRFGVLIEGHCETNF 588
            +++ A LVK+LRE+TGAGMMDCKKAL E+GGD+EKA  +LR+KGL+ A KK+ R+A EG + SYI   +R GVL+E +CET+F
Sbjct:    1 MSIDAKLVKELREKTGAGMMDCKKALEESGGDMEKAITWLRQKGLAGAAKKASRVAAEGVVDSYIHFGNRIGVLVEVNCETDF 83
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNJB (Elongation factor Ts OS=Synechococcus sp. GN=tsf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAAKPIAK---EQPAPAETKETVEKPPAVAVS 354
            KEDL +KPE IR KIV+GRI KRL+EL+LL+QP+IK+  + V++ VKQ IA +GENI+V+RFVR+ LGEG+EK+  DFAAEVAAQ   KP      E+  PA  +E   +P   A S
Sbjct:  130 KEDLANKPENIREKIVQGRIEKRLKELSLLDQPFIKDSSITVEELVKQHIAKLGENIRVRRFVRFVLGEGIEKEEVDFAAEVAAQAGLKPAEAPKVEETPPAPPEEPAPEPAPAAES 246

HSP 2 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 49/83 (59.04%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIP-DSRFGVLIEGHCETNF 588
            +++ A LVK+LRE+TGAGMMDCKKAL ++GGD+EKA  +LR+KGL+ A KK+ R+A EG + SYI   +R GVL+E +CET+F
Sbjct:    1 MSIDAKLVKELREKTGAGMMDCKKALEDSGGDMEKAITWLRQKGLAGAAKKASRVAAEGAVDSYIHFGNRIGVLVEVNCETDF 83
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CYAP7 (Elongation factor Ts OS=Cyanothece sp. (strain PCC 7424) GN=tsf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQT--------AAKPIAKEQPAPAETKETVEKP 336
            ++DL  KPE I+ KIVEGRI KRL+EL+L++QPYIK+  + V + +KQTIA IGENI+V+RFVR+ LGEG+EK+ ++FA EVAAQT        AA+  AK +P   ET E VE P
Sbjct:  131 RDDLAGKPENIKDKIVEGRIGKRLKELSLMDQPYIKDQSITVAELIKQTIAQIGENIQVRRFVRFVLGEGIEKEEKNFAEEVAAQTGQKVEQPQAAQETAKVEPPTPETVEEVEPP 246

HSP 2 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++A LVK+LRE+TGAGMMDCKKAL E+GGD+EKA E+LR+KG++ A+KKSGR+  EG I SYI    R GVL+E +CET+F
Sbjct:    4 ITAKLVKELREKTGAGMMDCKKALGESGGDMEKATEWLRQKGITSAEKKSGRITAEGLIHSYIHTGGRIGVLVELNCETDF 84
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNP2 (Elongation factor Ts OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tsf PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.829e-25
Identity = 54/85 (63.53%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            ++DL  KP+ I+ KIVEGRI KRL+EL+L++QPYI++  M V++ VKQ+IATIGENI+++RF R+ LGEG+EKK +DFAAEVAAQ
Sbjct:  131 RDDLAGKPDNIKEKIVEGRIAKRLKELSLMDQPYIRDQNMTVEELVKQSIATIGENIQIRRFQRFVLGEGIEKKEEDFAAEVAAQ 215

HSP 2 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA LVK+LR++TGAGMMDCKKAL ET GD+ KA E+LR+KG++ A+KK+GR+A EG I SYI      GVL+E +CET+F
Sbjct:    4 ISAKLVKELRDKTGAGMMDCKKALGETNGDITKAIEWLRQKGITSAEKKAGRVAAEGLIESYIHTGGGIGVLVEVNCETDF 84
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_PROMS (Elongation factor Ts OS=Prochlorococcus marinus (strain AS9601) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAA 264
            ++DL  KPEQI+ KIVEGRI KRL EL LL QPYIK+  + V+D VKQ  A IGENIKV+RF RY LGEG+EK   DFA EVA+
Sbjct:  131 RDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVAS 214

HSP 2 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNFGG*K*QISRSWVIDLTMQ 642
            ++A LVK LR++TGAGMMDCKKAL+ET G+L+KA E+LRKKG++ A+KKSGR+A EG IGSYI   SR GVL+E +CET+F   +  I +S + D++MQ
Sbjct:    4 ITAKLVKDLRDKTGAGMMDCKKALNETEGNLDKALEWLRKKGIASAEKKSGRVAAEGSIGSYIHTGSRVGVLLELNCETDFVA-RGDIFQSLLKDVSMQ 101
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_PROM9 (Elongation factor Ts OS=Prochlorococcus marinus (strain MIT 9312) GN=tsf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAA 264
            ++DL  KPEQI+ KIVEGRI KRL EL LL QPYIK+  + V+D VKQ  A IGENIKV+RF RY LGEG+EK   DFA EVA+
Sbjct:  131 RDDLSGKPEQIKEKIVEGRIAKRLNELVLLSQPYIKDSSLTVEDLVKQAAAKIGENIKVRRFTRYTLGEGIEKNQMDFAEEVAS 214

HSP 2 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 58/99 (58.59%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNFGG*K*QISRSWVIDLTMQ 642
            ++A LVK LR++TGAGMMDCKKAL+ET G+++KA E+LRKKG++ A+KKSGR+A EG IGSYI   SR GVL+E +CET+F   +  I +S + D++MQ
Sbjct:    4 ITAKLVKDLRDKTGAGMMDCKKALNETDGNVDKALEWLRKKGIASAEKKSGRIAAEGSIGSYIHTGSRVGVLLELNCETDFVA-RGDIFQSLLKDVSMQ 101
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNR3 (Elongation factor Ts OS=Synechococcus sp. (strain RCC307) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 54/87 (62.07%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTA 273
            ++DL +KPE +++KIVEGR+ KRL+ELALLEQP+IK+  + V + VKQ    IGENI+V+RF RY LGEG+E K +DFAAEVAA TA
Sbjct:  131 RDDLGNKPEAMKAKIVEGRVNKRLKELALLEQPFIKDSSLSVAEMVKQLAGKIGENIQVRRFTRYTLGEGIEVKQEDFAAEVAAMTA 217

HSP 2 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA LVK+LR++TGAGMMDCKKAL+ET GDL KA E+LR+KG++ A+KK+GR A EG +GSYI   +R GVL+E +CET+F
Sbjct:    4 ISAKLVKELRDQTGAGMMDCKKALNETSGDLTKATEWLRQKGIASAEKKAGRTAAEGAVGSYIHTGARVGVLVEVNCETDF 84
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNPW (Elongation factor Ts OS=Synechococcus sp. (strain WH7803) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 53/86 (61.63%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQT 270
            ++DL  KPEQ++ KIVEGRI KRL+ELAL+EQP+IK+  + V + VKQT   IGEN+KV+RF RY LGEG+E +  DFAAEVA+ T
Sbjct:  132 RDDLDGKPEQMKEKIVEGRINKRLKELALMEQPFIKDSSLTVAELVKQTAGKIGENVKVRRFTRYTLGEGIEVEENDFAAEVASMT 217

HSP 2 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:  340 AVAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            A AVSA LVK LR++TGAGMMDCKKAL+ T GD +KA E+LR+KG++ A+KKSGR A EG IGSYI   +R GVLIE +CET+F
Sbjct:    2 AAAVSAKLVKDLRDKTGAGMMDCKKALAATDGDADKAIEWLRQKGIASAEKKSGRTAAEGAIGSYIHTGARVGVLIEINCETDF 85
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNP6 (Elongation factor Ts OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAA 276
            ++DL +KPE IR KIV GRI KRL+EL LL+QPYI++  + V + VKQ+IA +GENI+V+RF R+ LGEG+EK   DFAAEVAAQ AA
Sbjct:  131 RDDLANKPENIREKIVVGRIEKRLKELTLLDQPYIRDPNISVAELVKQSIAELGENIQVRRFTRFVLGEGIEKAESDFAAEVAAQAAA 218

HSP 2 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA LVK+LRE+TGAGMMDCKKAL+E  GDL+KA E+LR+KG++ A+KKSGR A EG +GSYI    R GVL+E +CET+F
Sbjct:    4 ISAKLVKELREKTGAGMMDCKKALNENDGDLQKAIEWLRQKGIASAEKKSGRTAAEGLVGSYIHTGGRVGVLVEVNCETDF 84
[Close]
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNE7 (Elongation factor Ts OS=Synechococcus elongatus (strain PCC 7942) GN=tsf PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   13 KEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAA 276
            ++DL +KPE IR KIV GRI KRL+EL LL+QPYI++  + V + VKQ+IA +GENI+V+RF R+ LGEG+EK   DFAAEVAAQ AA
Sbjct:  131 RDDLANKPENIREKIVVGRIEKRLKELTLLDQPYIRDPNISVAELVKQSIAELGENIQVRRFTRFVLGEGIEKAESDFAAEVAAQAAA 218

HSP 2 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA LVK+LRE+TGAGMMDCKKAL+E  GDL+KA E+LR+KG++ A+KKSGR A EG +GSYI    R GVL+E +CET+F
Sbjct:    4 ISAKLVKELREKTGAGMMDCKKALNENDGDLQKAIEWLRQKGIASAEKKSGRTAAEGLVGSYIHTGGRVGVLVEVNCETDF 84
The following BLAST results are available for this feature:
BLAST of EY702284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_SYNJA7.953e-2855.26Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_SYNJB1.039e-2755.56Elongation factor Ts OS=Synechococcus sp. GN=tsf P... [more]
EFTS_CYAP71.039e-2756.03Elongation factor Ts OS=Cyanothece sp. (strain PCC... [more]
EFTS_SYNP22.829e-2563.53Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_PROMS3.127e-2465.48Elongation factor Ts OS=Prochlorococcus marinus (s... [more]
EFTS_PROM93.127e-2465.48Elongation factor Ts OS=Prochlorococcus marinus (s... [more]
EFTS_SYNR35.335e-2462.07Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_SYNPW5.335e-2461.63Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_SYNP66.967e-2462.50Elongation factor Ts OS=Synechococcus sp. (strain ... [more]
EFTS_SYNE76.967e-2462.50Elongation factor Ts OS=Synechococcus elongatus (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702284 ID=EY702284; Name=EY702284; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGAAGGAAGATCTCTTGTCGAAACCAGAGCAGATCAGGTC
AAAGATTGTTGAAGGGCGGATCAGAAAGAGGCTTGAGGAGTTGGCATTGC
TTGAACAACCATACATTAAGAATGATAAGATGGTGGTAAAGGACTGGGTG
AAGCAAACCATTGCAACCATTGGAGAAAACATAAAAGTCAAAAGGTTTGT
GCGGTACAATCTTGGAGAGGGCTTGGAGAAGAAAAGCCAGGATTTTGCTG
CTGAGGTTGCTGCTCAGACTGCTGCAAAACCAATCGCAAAAGAACAGCCT
GCTCCAGCTGAAACAAAGGAAACTGTAGAGAAACCACCAGCAGTTGCAGT
CTCTGCTGCACTTGTTAAACAACTAAGGGAGGAAACAGGAGCAGGAATGA
TGGACTGCAAGAAAGCTCTCTCTGAAACTGGAGGGGATCTTGAGAAGGCA
CAGGAGTACCTCAGGAAAAAGGGTCTCTCTATTGCTGACAAGAAATCAGG
GCGGCTTGCACCGGAGGGGAAAATTGGGTCATATATTCCTGATTCTCGCT
TCGGAGTACTAATTGAAGGCCATTGTGAGACAAACTTTGGGGGGTAAAAA
TGACAAATTTCCAGGAGCTGGGTTATTGATCTAACAATGCAAGCTGTGGG
TTTGGCCCGGAAGTGGGATTTCTTACCCCTTGAAAAACTTTCCCGGAGGA
GCTTCTTAATTTAACAAACAGGAAACTTCAAATCCACAAGCGGGGGGCCC
TTTTTCCGAAACCTCCAAAAACTTTTGGACGGACATCTCTTGAAGGGAGC
GATCCTCCACACGCGTCTGGGGGGGCTTGCTCCTTTCCCACCCCCC
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