CX077621

Overview
NameCX077621
Unique NameCX077621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.786e-40
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VAD PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.066e-39
Identity = 85/94 (90.43%), Postives = 87/94 (92.55%), Query Frame = -3
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.066e-39
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = -3
Query:    2 SPNMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 289
            S +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  131 STDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 226          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.819e-39
Identity = 79/102 (77.45%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VA+ PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.819e-39
Identity = 79/102 (77.45%), Postives = 85/102 (83.33%), Query Frame = 3
Query:    3 GFITTPLTTGRLPSQHLDPAPPKLFWFTPAFPTYPTVAEQFLDIKRTHPEGHFNVADFPSFAISFATAPAALANCPPFTSLLSMLCMDVPKGILGEVDSSCL 308
            GFITTPLTTGRLPSQHLDPA PKLFWFTP  PT PTVA+QF D KRT P+G+  VA+ PSFAISFATAPAALANCPP   ++SMLCM VPKGI  EVDSS L
Sbjct:   15 GFITTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSFL 116          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.375e-39
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = -3
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225          
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.375e-39
Identity = 84/94 (89.36%), Postives = 87/94 (92.55%), Query Frame = -3
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L +GGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGNAGVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225          
The following BLAST results are available for this feature:
BLAST of CX077621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YCF72_ORYSJ4.786e-4078.43Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI4.786e-4078.43Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA4.786e-4078.43Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI4.786e-4078.43Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
RK2_CUCSA1.066e-3990.4350S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2A_POPAL1.066e-3988.5450S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
YCF72_SACOF1.819e-3977.45Uncharacterized protein ycf72 OS=Saccharum officin... [more]
YCF72_SACHY1.819e-3977.45Uncharacterized protein ycf72 OS=Saccharum hybrid ... [more]
RK2_POPTR2.375e-3989.3650S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2B_POPAL2.375e-3989.3650S ribosomal protein L2-B, chloroplastic OS=Popul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_57H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-57H04-O8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077621 ID=CX077621; Name=CX077621; organism=Citrus sinensis; type=EST; length=795bp
CAGGGTTCATAACTACTCCTCTTACTACAGGACGCTTACCTAGCCAACAT
TTAGATCCGGCTCCACCCAAACTTTTCTGGTTCACCCCAGCATTCCCCAC
TTATCCGACTGTTGCTGAGCAGTTTTTGGATATCAAACGGACCCACCCAG
AAGGTCATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTCGCT
ACAGCACCCGCTGCTCTAGCTAATTGTCCACCCTTTACTAGTCTTCTTTC
TATGTTATGTATGGACGTGCCTAAGGGCATATTGGGTGAAGTAGATTCGT
CTTGTCTTTTTGATTGATCAAAAAGATCCTTCACTCCCATTGAGCACAGA
TGTTTCAGTACTCTGTAGCTTGGTCGGCAATGACCAAGCCGCGGAGTTTA
TAAAGCGTCCTCGCGGATACACCCACCCTCTCAGTCAGCCGACAGCCACA
CCAGCATATGAAGCGTAAGTGTGAACGTAGGCCAAGAGCTGTAGAACCCG
AGCGGCCGCCCACAGGTAAACCATACTATGTTCGCCTTCTTCTCGCTTCC
CAAACCTGGATCACTGAAAGGGGCTTGTACTAGTAACCACACCCATGACT
CAGTCAAGTTGTTACCAAACCTCCAAAAGACCCGGAGTGAGAACAACTGG
AAGAGAATCGGTAGCGGCCTGAAGAATAAATTTCTAAAAAAGAAGATGTC
TCGCAAGAGTCGCGTGATGAAAAGTACCATCAGGTAGATGAGACAAAACC
CTCATCGCCCAATCGCGCAAAAGCCTGAGCAAAGATGGCGGAGAT
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