CX077596

Overview
NameCX077596
Unique NameCX077596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077596 vs. ExPASy Swiss-Prot
Match: MARE3_HUMAN (Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = -3 
Query:  347 NPTTQAIKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAE 628
            NP +      +  A +   ++Q+ +LKL+VD LEKERDFYF+KLRDIE++CQ    E+ P++  I  ILYAT ++     E   +  HQQ++ +
Sbjct:  187 NPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYAT-EEGFAPPEDDEIEEHQQEDQD 279
[Close]
BLAST of CX077596 vs. ExPASy Swiss-Prot
Match: MARE3_RAT (Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = -3 
Query:  347 NPTTQAIKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAE 628
            NP +      +  A +   ++Q+ +LKL+VD LEKERDFYF+KLRDIE++CQ    E+ P++  I  ILYAT ++     E   +  HQQ++ +
Sbjct:  187 NPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYAT-EEGFAPPEDDEIEEHQQEDQD 279
[Close]
BLAST of CX077596 vs. ExPASy Swiss-Prot
Match: MARE3_MOUSE (Microtubule-associated protein RP/EB family member 3 OS=Mus musculus GN=Mapre3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.146e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = -3 
Query:  347 NPTTQAIKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQAMVFHQQKEAE 628
            NP +      +  A +   ++Q+ +LKL+VD LEKERDFYF+KLRDIE++CQ    E+ P++  I  ILYAT ++     E   +  HQQ++ +
Sbjct:  187 NPPSARNGGHEADAQILELNQQLLDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYAT-EEGFAPPEDDEIEEHQQEDQD 279
[Close]
BLAST of CX077596 vs. ExPASy Swiss-Prot
Match: MARE2_MOUSE (Microtubule-associated protein RP/EB family member 2 OS=Mus musculus GN=Mapre2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.749e-11
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = -3 
Query:  377 TAAPKAQSSHNARRHDVTSVNPTTQAIKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQA 688
            ++A +A SS +A R D    +  TQ I+ +          EQ+  LKL+++ +EKERDFYF KLR+IE+LCQ  G E+  +V  +  +LYA+D+      E +A
Sbjct:  221 SSAKRASSSGSASRSDK---DLETQVIQLN----------EQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMEVLYASDEQEGQTEEPEA 311
The following BLAST results are available for this feature:
BLAST of CX077596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MARE3_HUMAN2.409e-1240.43Microtubule-associated protein RP/EB family member... [more]
MARE3_RAT3.146e-1240.43Microtubule-associated protein RP/EB family member... [more]
MARE3_MOUSE3.146e-1240.43Microtubule-associated protein RP/EB family member... [more]
MARE2_MOUSE7.749e-1138.46Microtubule-associated protein RP/EB family member... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_57G03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-57G03-M6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077596 ID=CX077596; Name=CX077596; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTTTAACTGTAAAACACTGTATTTCACGATCCCACCA
TTTTCTGAAGTACATTTGAAACATCAATTGCTACAACATATATGGTAAAA
TGTGCAGAGAAAACTATCTTGCAAGCTAGATGGAATACAACAAGTAAATC
ATGGAAATGAGAAGTTAACTCAGTAAGTCATAAGAGGTGACCCACTGCAG
TGGACATCAAAAACATCAAAGAGCCTTTGCCTAGGAGACAATGTTGTGAT
GCCAGCAGTATCAACATCAACATTCACAATGTTCTTCCTCTTCTGAGTTT
CTGAACTTGTTCTTTCTTCCGACACTTCAGCAATAGGACTCAGCGGTTCT
GCTTCTTTCTGCTGATGGAACACCATGGCTTGAGCTTCAGCCACCACTGA
TGCATCATCATCTGTAGCATACAGGATCCTTTTAATTGCTCCTACAATAG
GCAAATGTTCAATCCCCGGACTCTGACACAGAATCTCAATATCTCGTAAC
TTCGCAAAGTAGAAGTCCCTCTCCTTCTCGAGGCTATCCACTGACAGCTT
CAGCTCTGTGATCTGTTCATCGTATGCTGGCACAACAGCAGATGGCTTTG
AGGTCTTAATAGCTTGAGTTGTAGGGTTGACAGACGTTACATCATGCCTT
CGAGCATTGTGAGAAGACTGAGCTTTAGGAGCGGCTGTCACACCCTTGTT
TGTAGATTGAGATGATGCAGATTTTTTGCTTGCTTCCTTTCCTCCCTTGC
AAGACTCCCTTCTTTCCAATGGATTGTAACTGT
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