CX077528

Overview
NameCX077528
Unique NameCX077528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CX077528 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 263.077 bits (671), Expect = 6.992e-70
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:   45 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKSHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 452
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKK HRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CX077528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33_VITVI6.992e-7099.26Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC6.992e-7099.26Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS6.992e-7099.26Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ6.992e-7099.26Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI6.992e-7099.26Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO6.992e-7099.26Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA6.992e-7099.26Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE6.992e-7099.26Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU6.992e-7099.26Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI6.992e-7099.26Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_57C06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-57C06-E12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077528 ID=CX077528; Name=CX077528; organism=Citrus sinensis; type=EST; length=571bp
TCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAATGGCC
CGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAA
GCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGGTGGAG
TCAAGAAGTCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTGAAATC
CGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCA
GCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAGGTTCC
AAAGCCACGCGGTTCTTGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTG
GGTCTGTTCGAGGACACCAACCTTTGTGCTATCCATGCCAAGCGAGTCAC
CATTATGCCCAAGGATATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTG
CTTAATTTGTGATTCCTTATGTAGTCGTCAGTTTCCTATTTAGTTTGCTA
GTTTTTCTTTATTCCGGTTTTTACATGTAAAGAATGATATGATGGATTGA
AGAATATTTGGAATTTGACCT
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