CX077490

Overview
NameCX077490
Unique NameCX077490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077490 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3 
Query:  141 VVADELDSYLDEKVIPRMEDFNILSWWKTNANRYPTLARIARDILAIPITTIASESTFSTSGRVVSSYRNKLHPSTLEALMCCQSWLRA 407
            V ++ELD Y+ E ++     F+ILSWW+     YP L +IARD+LAI ++T+ASES FS  GRVV  YRN+L    +EAL+C + W+ A
Sbjct:  634 VESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAA 722
[Close]
BLAST of CX077490 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3 
Query:  141 VVADELDSYLDEKVIPRMEDFNILSWWKTNANRYPTLARIARDILAIPITTIASESTFSTSGRVVSSYRNKLHPSTLEALMCCQSWLRA 407
            V ++ELD Y+ E ++     F+ILSWW+     YP L +IARD+LAI ++T+ASES FS  GRVV  YRN+L    +EAL+C + W+ A
Sbjct:  665 VESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAA 753
The following BLAST results are available for this feature:
BLAST of CX077490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE2.181e-1948.31Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE2.181e-1948.31Putative AC transposase OS=Zea mays PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_57A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-57A05-A10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077490 ID=CX077490; Name=CX077490; organism=Citrus sinensis; type=EST; length=697bp
AAATGTGGCAAATTGAGAGATAGCCTCAGATTTCAAACCTAAAACAATGA
AAATGATATAAGTAACGTAACTTATAAGTGTAAATATTAATAACTGTATA
ATATAATTACAATGTAAAATAAACTCATACTGCTATTGTAAGCTCGTAAC
CAACTTTGACAGCACATTAAGGCCTCCAATGTGCTTGGATGAAGTTTGTT
ACGGTATGAGCTCACAACTCTACCACTGGTGCTAAAAGTTGATTCAGAAG
CAATTGTTGTAATTGGAATTGCCAAAATATCTCTAGCAATTCGAGCTAAT
GTAGGATACCTATTAGCATTTGTCTTCCACCAACTCAAAATATTAAAATC
TTCCATCCGGGGTATAACTTTCTCATCCAAATATGAATCTAATTCATCTG
CAACAACTGCACAATCTCCATTGTTTACATAATCATCAAAGCCTGTCATC
CATTTGGTTGCTTTCTTATAAGAATCCCCTGTAGATCTAGTAGAAGAACT
ACTACCAGTATAATCAAAGCAATAAACAGTTGGTGAAAACTTCAATTAAT
ACTCTTCAACTAATTCCCGGCAAATGGTGACCACTTTCCTAACATACAAC
TATTTTCATATTTATTATTTTTAACAATATTTATAATTTTGTTATTTATT
TATTAGTAATTTTAAAAATAAAAATAAAATTAAAAATTAAAATGGGG
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