EY702230

Overview
NameEY702230
Unique NameEY702230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702230_ssr32 microsatellite EY702230_ssr32:32..41. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702230_ssr89 microsatellite EY702230_ssr89:89..103. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702230_ssr135 microsatellite EY702230_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1910 contig Csv1_Contig1910:95..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.103e-62
Identity = 125/190 (65.79%), Postives = 144/190 (75.79%), Query Frame = 2
Query:  206 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AVPLQDPQKQHINLEDSIT--KDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAYAEGTQKSNGFY 757
            MS+D SSERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+    + H     S+   KDC SSS+     S  E  + E PRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A     QKSNG+Y
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA----GQKSNGYY 184          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 105/164 (64.02%), Postives = 125/164 (76.22%), Query Frame = 2
Query:  218 LSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCN-KFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 706
            +++E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+  L  P  Q  N       + GSSS+ + K  S   T      R+   RPPEKRQRVPSAYN+FIKEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNFQATNYA---VPEYGSSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.035e-49
Identity = 102/181 (56.35%), Postives = 129/181 (71.27%), Query Frame = 2
Query:  227 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKD----CGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSNGFY 757
            E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D  + ++ + +   ++     GSSS+  +    F  ++++T  M  +RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL        KLD+A   A   QK    Y
Sbjct:   10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKVQRLY 186          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.069e-46
Identity = 104/201 (51.74%), Postives = 127/201 (63.18%), Query Frame = 2
Query:  224 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQKQHINLEDSITKDC---------------GSSSKCNKFSSA-----FETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK--LDGNKQAKLDKAAAYAEGTQKSNGFY 757
            +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD    H  L++S    C                SSSK     +A     +     +  +    RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL    +G K+         A  ++K  GFY
Sbjct:    8 AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHH--LQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKKLVDVDPIPTAPSSKKIQGFY 206          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.639e-45
Identity = 89/159 (55.97%), Postives = 113/159 (71.07%), Query Frame = 2
Query:  206 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 682
            MS+  +SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q Q+   + +       +S+  + S+A         ++ PIRPPEKRQRVPSAYNRFIKEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.234e-44
Identity = 101/196 (51.53%), Postives = 117/196 (59.69%), Query Frame = 2
Query:  224 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS----ALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETA------------EHETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQ-KSNGFY 757
            S+ +CYV CN+C TILAV+VP +SLF  VTVRCG C NLL+VNM S    A   + LQ     + N +D + +   + S  N                     +HE P+ PP+ RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E       GFY
Sbjct:   22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFY 217          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.917e-44
Identity = 103/194 (53.09%), Postives = 117/194 (60.31%), Query Frame = 2
Query:  224 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQ-------------HINLED----------------SITKDCG-SSSKCNKFSSAFETA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 685
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A +         E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.917e-44
Identity = 103/194 (53.09%), Postives = 117/194 (60.31%), Query Frame = 2
Query:  224 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQ-------------HINLED----------------SITKDCG-SSSKCNKFSSAFETA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 685
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A +         E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.488e-44
Identity = 103/210 (49.05%), Postives = 121/210 (57.62%), Query Frame = 2
Query:  221 SSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD----------PQKQHINLEDSITKDCGSSSKCNKFSSAFETAEH-------------------ETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAE-GTQKSNGFY 757
            S++++CYVHC++C+T+LAVSVP SSLF  VTVRCGHC+NLL+V +      +P             P     NL + + +  G +   N   S   +A H                   E PR PP  RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E G     GFY
Sbjct:   21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEM-RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFY 229          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.448e-43
Identity = 102/218 (46.79%), Postives = 121/218 (55.50%), Query Frame = 2
Query:  227 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 757
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L++                       S    C +++     +SA   A    P+ P   P      EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL  D G K+  +       E     +G Y
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246          
The following BLAST results are available for this feature:
BLAST of EY702230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB2_ARATH3.103e-6265.79Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB5_ARATH4.203e-5164.02Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB2_ORYSJ1.035e-4956.35Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ9.069e-4651.74Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ORYSJ2.639e-4555.97Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ARATH2.234e-4451.53Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB4_ORYSJ2.917e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI2.917e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB3_ARATH8.488e-4449.05Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB5_ORYSJ1.448e-4346.79Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-E06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702230 ID=EY702230; Name=EY702230; organism=Citrus sinensis; type=EST; length=883bp
TTTTCCTTCTTTTCTTATCACCATTTTCTCCCTCTCTCTCTCCAAATAAT
TATTATTTATACATGATATCAAACCATTTTGTTTTGTTTTCTTCTTCTTC
TTCGTCTTTGTCTTTCTTTTAATTTGTTCAAGATTTGATTGATTGATAAT
AGAACTCTTGCGTTTCTATTGTTTGTCGGTACACTTCTTGATCTCCACTG
AAACTATGTCACTGGACTTGTCATCTGAACGTGTTTGTTATGTTCACTGC
AACTACTGCAACACCATTTTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTT
CAACATTGTGACTGTTAGATGTGGGCATTGCGCCAATTTGCTAAATGTAA
ACATGGTATCTGCACTTCAAGCAGTTCCTCTTCAAGACCCTCAGAAACAA
CACATAAACCTAGAAGATTCCATTACTAAGGATTGTGGATCATCTTCAAA
ATGCAATAAGTTTTCTTCAGCATTTGAGACTGCAGAGCATGAAACTCCTC
GAATGCCTCCTATTCGTCCCCCAGAGAAGAGACAACGAGTTCCTTCTGCA
TACAATAGGTTTATCAAGGAGGAAATCCAAAGGATTAAGGCCAGTAACCC
TGACATCAGCCATAGAGAAGCTTTTAGCACAGCAGCAAAAAATTGGGCAC
ATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGCAAGCA
AAACTAGACAAGGCTGCAGCCTACGCAGAGGGCACTCAAAAGTCCAATGG
ATTCTACTAAAACATCTATATAATAAGTATATGATGTGAGTAGATGCATG
CAGCTCGAAGCAGAAGTCATATAAATATTGTAGAAGCATGCAGAAGCACN
AGTCATATATAGAGATATCTATCCATTGTCTAT
back to top