EY702181

Overview
NameEY702181
Unique NameEY702181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.682e-44
Identity = 94/134 (70.15%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENIDWCQNPQK 389
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR WI+G+GV SI  + LVNSKE  PTFE  K         G  L++  EN+   Q   K
Sbjct:  283 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSI-GKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 415          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTK 320
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W+S +GV +I  + LVNSKE  P+FE  K
Sbjct:  283 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTI-GKKLVNSKEGPPSFEQPK 387          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.547e-42
Identity = 90/134 (67.16%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENIDWCQNPQK 389
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W+  IGV +IS R LVNS+E  PTF+  K         G  L++  EN+   Q   K
Sbjct:  270 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKR-LVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADK 402          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.547e-42
Identity = 90/134 (67.16%), Postives = 99/134 (73.88%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENIDWCQNPQK 389
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W+S +GV +I  + LVNSKE  PTFE  K         G  L+   EN+   Q   K
Sbjct:  283 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTI-GKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADK 415          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.020e-42
Identity = 88/134 (65.67%), Postives = 100/134 (74.63%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENIDWCQNPQK 389
            T  DFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR WISG+GV + + + LVNSKE  PTF+  K         G  L++  EN+   Q   K
Sbjct:  285 TGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDA-TGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.003e-41
Identity = 86/126 (68.25%), Postives = 97/126 (76.98%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENI 365
            T  DFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W+S  GV +I  R LVNS+E  P FE  K         G  L++  EN+
Sbjct:  274 TGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKR-LVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENV 398          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.310e-41
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKGWTMGRSLLRSTENIDWCQNPQK 389
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR WISG+GV S+  + LVNSKE  PTF+  K  T+ + LL ++  +   +N ++
Sbjct:  287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSV-GKKLVNSKEGPPTFDQPK-MTLDKLLLYASMLVQEQENVKR 413          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.710e-41
Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTK 320
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR W+S  GV +I AR LVNSKE  PTFE  K
Sbjct:  279 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENI-ARKLVNSKEGPPTFEQPK 383          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.488e-41
Identity = 83/126 (65.87%), Postives = 97/126 (76.98%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKGWT-----MGRSLLRSTENI 365
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W+SG G+ +I  + L+NS +  PTFE  K         G  L++  EN+
Sbjct:  287 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDK-LLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENV 411          
BLAST of EY702181 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.109e-40
Identity = 83/126 (65.87%), Postives = 97/126 (76.98%), Query Frame = 3
Query:    3 TRPDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWISGIGVGSISARALVNSKEAAPTFEPTKG-----WTMGRSLLRSTENI 365
            T  DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W+SG G+  I  + L+NS++  PTFE  K         G  L++  EN+
Sbjct:  282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEK-LLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENV 406          
The following BLAST results are available for this feature:
BLAST of EY702181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_MALDO3.682e-4470.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.071e-4382.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.547e-4267.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.547e-4267.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.020e-4265.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.003e-4168.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.310e-4167.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.710e-4179.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC8.488e-4165.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.109e-4065.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-A01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702181 ID=EY702181; Name=EY702181; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGT
CGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGT
GTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCA
AGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTG
AGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGG
TGTTGGAAGCATCTCGGCAAGAGCCCTTGTGAACTCAAAGGAAGCAGCCC
CAACATTCGAGCCAACCAAGGGATGGACAATGGGAAGAAGCCTGCTTCGA
AGTACGGAAAACATTGATTGGTGCCAAAACCCACAAAAAAAAAAATGGGG
AAAAAAAAATTCTCATTTTGGGGGGTAACAAAAATTATTTTTGGATGGGG
GGCGCCCCCCCCTTTGGGGGAGAATCCAAAGGGCAAAGGCCTTTTTTTCC
TAGACAAAGGGGGAGAACCATATTTCATCTATTATTGGGAAGAAAGAAAA
ACTCCGCCCGCCGTCCCCCCCCCCCCCCCACCCCGGACAAATTTTTTTTT
TTTCCTCTTCTCTCTTCTTTAAGAAAAGAATATTGTCTATCCAGCAAACC
ATATATATCAGACTTCAATTAACTTCCTCCTCTCTCCTTCACCCTTACGC
CTCACTACACGGCATCACCCACTTCAGGCCCCTATGCCCTATTATATCTT
TCTTTCCTCTCAGCCGAGTGAACTTTGATGAGACCGAACGTGTAAGACAG
ATACACGCGCGCGCCGAGGGTACTAAACCACTTTGTTACTCGACGAGACA
ACGTGGCTAGGGGAAC
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