EY702170

Overview
NameEY702170
Unique NameEY702170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 5.677e-72
Identity = 136/184 (73.91%), Postives = 153/184 (83.15%), Query Frame = 3
Query:   78 LVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYT--YLTSLLP*HLNDKGDT 623
            +VKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNF KCN G    +   + SL    LNDKGDT
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLA---LNDKGDT 181          

HSP 2 Score: 25.409 bits (54), Expect = 5.677e-72
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  613 KGTPLNAFYYHNCKPTDTYHFWGPNLPLTFPDYKNPLT 726
            KG  ++A YYH  KP  T    G  L  +F   +N LT
Sbjct:  178 KGDTVSASYYHTVKPV-TNTAVGAELTHSFSSNENTLT 214          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.996e-65
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 3
Query:   84 KGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYTYLTSLLP*HLNDKGD 620
            KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+F KCN G   +T    +   +LN+KGD
Sbjct:    3 KGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLS-FTNADLVASLNLNNKGD 180          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 4.762e-59
Identity = 119/186 (63.98%), Postives = 136/186 (73.12%), Query Frame = 3
Query:   78 LVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGA-----ELYTYLTSLLP*HLNDKGD 620
            +VKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G   K N        +L   LT      LN+KGD
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLT------LNEKGD 180          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.585e-54
Identity = 110/181 (60.77%), Postives = 131/181 (72.38%), Query Frame = 3
Query:   78 LVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYTYLTSLLP*HLNDKGD 620
            +VKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNF K N G   +T    +    +NDKGD
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLS-FTKEDLIASLTVNDKGD 180          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.753e-53
Identity = 105/181 (58.01%), Postives = 130/181 (71.82%), Query Frame = 3
Query:   87 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYT--YLTSLLP*HLNDKGDT 623
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN  K N G        + SL   +LN+KGD+
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASL---NLNNKGDS 180          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.938e-52
Identity = 106/182 (58.24%), Postives = 131/182 (71.98%), Query Frame = 3
Query:   78 LVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAEL-YTYLTSLLP*HLNDKGD 620
            +VKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   N G       LT+ L   LNDKG+
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASL--ILNDKGE 180          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.094e-50
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 3
Query:   87 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYTYLTSLLP*HLNDKGDT 623
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K N  A  YT    +   +LN+KGD+
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYN-AALSYTNQDLIASLNLNNKGDS 181          
BLAST of EY702170 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.663e-43
Identity = 90/183 (49.18%), Postives = 120/183 (65.57%), Query Frame = 3
Query:   78 LVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFPKCNCGAELYTYLTSLLP*HLNDKGDT 623
            +V   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +F K N    L T    +   HLN+ GDT
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSL-TSPDLIASLHLNNHGDT 182          
The following BLAST results are available for this feature:
BLAST of EY702170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_SOLTU5.677e-7273.91Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU1.996e-6569.27Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA4.762e-5963.98Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH1.585e-5460.77Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ1.753e-5358.01Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH1.938e-5258.24Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT3.094e-5056.67Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE3.663e-4349.18Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-H01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702170 ID=EY702170; Name=EY702170; organism=Citrus sinensis; type=EST; length=964bp
TTCCCGACCCACGCGTCCGAGCTGAAATATCAAAACTGATATTTCTCAGC
GTTTCCTTTCCATTTTCTCTGGAGAATCTGGTGAAAGGCCCCGGGCTCTA
CTCTGAAATCGGCAAGAAAGCCCGAGATCTTCTCTACAAGGACTACCAGA
GCGACCACAAGTTCACTGTCACTACTTACACGTCAGCTGGAGTCGCGATA
ACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTGGCTGATGTCAGCAC
TCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGTTGATACTAACT
CTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTCCTGGACTCAAG
TCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGCAAGGTGGAACT
CCAATATCAGCATGAATATGCTGGAATAAGCACTGGCATTGGATTCACTG
CAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGAAACAATTCTGTTGCT
CTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAACTTCCCCAAGTG
CAATTGCGGGGCTGAGCTATACACATATTTGACCTCCTTGCTTCCCTGAC
ATTTGAATGACAAAGGGGACACCCCTTAATGCCTTCTACTACCACAATTG
TAAGCCCACTGACACATACCATTTTTGGGGGCCGAACCTTCCCCTTACTT
TTCCAGACTACAAAAACCCTCTGACAAACCGGAATCCCGCATGGTCCTTG
AACTTTTAAACCTCTTGGAGGGCCCTGTAGAACAAAATTTTGTCCGGGTA
TTGTGTCTTAATCACACAAAATGTGGTGCGCACAGCCCTATTTTCCTTTC
CCGGAGAAGTATACCCCCCGGGCCCTTTAAAAAGAGTAAATATTGTGGTT
TGGTTGTTCTTCGGTCCAATGGTTATCTATTTTACTTTGGTTAAGGGAAA
AAAAAAAAAAAATT
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