EY680411

Overview
NameEY680411
Unique NameEY680411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.492e-38
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  403 SSYKYTLFK*FDLHFVQPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLAA 702
            S  ++T F    +   +PTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFL VGPFVKAGPL+NT+ AG   SLAA
Sbjct:   37 SPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAA 136          

HSP 2 Score: 29.261 bits (64), Expect = 1.492e-38
Identity = 17/43 (39.53%), Postives = 23/43 (53.49%), Query Frame = 2
Query:  689 GHWQPGGPVVIPHICLAILGNCFIQGRENPSLGPGLNLTGKEK 817
            G     G VVI  +CL + G    +  E PS+ P L LTG++K
Sbjct:  132 GSLAAAGLVVILSMCLTMYGIASFKEGE-PSIAPALTLTGRKK 173          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 6.049e-37
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1
Query:  457 TYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLAA 702
            T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF  VGPFVKAGPL+NT  AG   SLAA
Sbjct:   58 TFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAA 139          

HSP 2 Score: 30.8018 bits (68), Expect = 6.049e-37
Identity = 19/44 (43.18%), Postives = 25/44 (56.82%), Query Frame = 2
Query:  689 GHWQPGGPVVIPHICLAILG-NCFIQGRENPSLGPGLNLTGKEK 817
            G     G VVI  +CL I G + F +G   PS+ P L LTG++K
Sbjct:  135 GSLAAAGLVVILSMCLTIYGISSFKEGE--PSIAPSLTLTGRKK 176          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.034e-36
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 1
Query:  451 QPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLAAG 705
            +PT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF  VGPFVKAGPL+NT  AG   SLAAG
Sbjct:   54 KPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAG 138          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.105e-33
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query:  451 QPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLAA 702
            +PTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+L VGPF   GPL+NT + G   +L A
Sbjct:   46 KPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGA 129          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+  VGPF K GPL+N+++A
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVA 74          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 38/72 (52.78%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+  +GP+VK GPL+++ +A
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVA 75          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  469 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+  +GPF K GPL+NT ++
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLS 74          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.573e-19
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  469 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+  +GPFVK GPL+N+ IA
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIA 74          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.121e-18
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  469 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKI 675
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+  +GPFV+ GPL+NT I
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDI 73          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 37/72 (51.39%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+  +GP+VK GPL+++ +A
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVA 75          
The following BLAST results are available for this feature:
BLAST of EY680411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PSAL_SPIOL1.492e-3875.00Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH6.049e-3784.15Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_CUCSA2.034e-3685.88Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU2.105e-3377.38Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH2.950e-1956.94Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_THEEB3.853e-1952.78Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_CYACA5.033e-1954.29Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_ODOSI6.573e-1961.43Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_CYAME1.121e-1860.87Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_SYNEN2.498e-1851.39Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-G08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680411 ID=EY680411; Name=EY680411; organism=Citrus sinensis; type=EST; length=828bp
TACAAAGCCGAGCTCTTGGTAGAAACAGAAGTCTTTTAACAAACACAATC
TCAAATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCT
TTACTTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGA
TCTCCATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAA
AGCTATCCAATCTGAAAAGGTAACACATTGATGAAATATAAATGTTTATT
CGGAATTCATAATCATCATCCTTTTCCTTTTTAAGAATGATAGTTATGGT
TTTGCTTTTGAAATTGAAATGGACTCATTAGTTATCAAGGTAGAGTGTTG
CGGTTGGCAAGACTTCTGTTGTTGTGCTTTCAAGATTAAATTAGAAGTAT
AGAGCAGTTATAAATATACCCTTTTTAAGTAATTTGATTTGCACTTTGTG
CAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGATCCATTCATTGG
AAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCT
CAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTA
GAGGTGGGGTTGGCCCATGGATTCCTCTTTGTGGGTCCATTTGTTAAGGC
AGGGCCATTGAAAAACACAAAAATAGCAGGACCACCAAGGTCATTGGCAG
CCGGGTGGCCCTGTTGTGATCCCTCACATTTGCTTGGCAATCCTAGGGAA
TTGCTTCATTCAAGGAAGGGAAAACCCTTCCCTGGGCCCCGGCTTAAATT
TGACCGGAAAGGAAAAAGGGACCCGAAA
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