DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908612_ssr431 microsatellite DR908612_ssr431:431..442. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6370 contig Csv1_Contig6370:1..606. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CITSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.823e-16
Identity = 31/36 (86.11%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    RANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  124 GIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 159

HSP 2 Score: 42.3578 bits (98), Expect = 1.823e-16
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLITTILDTSWYGIIWTT
Sbjct:  112 SLITTILDTSWYGIIWTT 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_VITVI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.372e-16
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.1282 bits (100), Expect = 2.372e-16
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.210e-16
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISNSQQIGIHL+TDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISNSQQIGIHLATDFFLPFE 157

HSP 2 Score: 43.1282 bits (100), Expect = 5.210e-16
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_IPOPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ipomoea purpurea GN=ndhG PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.773e-16
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 41.5874 bits (96), Expect = 6.773e-16
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLI+TILDTSWYGIIWTT S
Sbjct:  110 SLISTILDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Buxus microphylla GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.773e-16
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISNGQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.1282 bits (100), Expect = 6.773e-16
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OENPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera parviflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.144e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.5134 bits (101), Expect = 1.144e-15
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OENGL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera glazioviana GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.144e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.5134 bits (101), Expect = 1.144e-15
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OENEH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.144e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.5134 bits (101), Expect = 1.144e-15
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OENBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera biennis GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.144e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.5134 bits (101), Expect = 1.144e-15
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OENAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera argillicola GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.144e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 43.5134 bits (101), Expect = 1.144e-15
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTILDTSWYGIIWTT S
Sbjct:  110 SLITTILDTSWYGIIWTTKS 129
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_CITSI1.823e-1686.11NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_VITVI2.372e-1683.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSHI5.210e-1680.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_IPOPU6.773e-1683.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BUXMI6.773e-1680.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENPA1.144e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENGL1.144e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENEH1.144e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENBI1.144e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENAR1.144e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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