DR908610

Overview
NameDR908610
Unique NameDR908610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2756 contig Csv1_Contig2756:1401..2005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 1.719e-88
Identity = 152/200 (76.00%), Postives = 168/200 (84.00%), Query Frame = 3
Query:    6 LPTGVFNQAMHWMAIAHSKAYDYIHAXXXXXXXXXVGVAHHVSFMRPYGLFDXXXXXXXXXXXXFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRATIL 605
            LPTGV+NQA+HWMAIAHS+AYDYIH+         VGVAHHVSF RPYGLFD            FPYVDSI D+LDFIGINYYGQEV+SGPGLKLV+ DEYSESGRGVYPDGLFR+L QF+ERYK LN+PF+ITENGVSDETDLIR+PY++EHLLA YAA+I GV V+GYLFWT SDNWEWADGYGPKFGLVAVDRA  L
Sbjct:  332 LPTGVYNQALHWMAIAHSEAYDYIHSKSKNERKPIVGVAHHVSFTRPYGLFDVAAVALANSLTLFPYVDSICDKLDFIGINYYGQEVISGPGLKLVDNDEYSESGRGVYPDGLFRILIQFNERYKRLNIPFVITENGVSDETDLIRKPYILEHLLATYAAIIMGVRVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNL 531          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.232e-86
Identity = 149/197 (75.63%), Postives = 166/197 (84.26%), Query Frame = 3
Query:    6 LPTGVFNQAMHWMAIAHSKAYDYIHAXXXXXXXXXVGVAHHVSFMRPYGLFDXXXXXXXXXXXXFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRA 596
            LP GVF++A+HWMA+AHSKAYDYIH          VGVAHHVSFMRPYGLFD            FPY+DSI ++LDFIGINYYGQE V G GLKLVETDEYSESGRGVYPDGL+RVL  FHERYKHL +PFI+TENGVSDETD+IRRPY+IEHLLA+YAAM+ GVPV+GY+FWTISDNWEWADGYGPKFGLVAVDR+
Sbjct:  296 LPMGVFHRALHWMAVAHSKAYDYIHGKISLKKPL-VGVAHHVSFMRPYGLFDIGAVTISNSLTIFPYIDSICEKLDFIGINYYGQEAVCGAGLKLVETDEYSESGRGVYPDGLYRVLLMFHERYKHLKVPFIVTENGVSDETDVIRRPYLIEHLLALYAAMLKGVPVLGYIFWTISDNWEWADGYGPKFGLVAVDRS 491          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGAL_SULSO (Beta-galactosidase OS=Sulfolobus solfataricus GN=lacS PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  210 DSISDRLDFIGINYYGQEVVSGPGLKLVETDEY----------------SESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            D +  RLD+IG+NYY + VV       V    Y                S+ G   +P+GL+ VL ++  RY   +L   +TENG++D+ D  R  Y++ H+  V+ A+ +G  V GYL W+++DN+EWA G+  +FGL+ VD  T
Sbjct:  308 DDLKGRLDWIGVNYYTRTVVKRTEKGYVSLGGYGHGCERNSVSLAGLPTSDFGWEFFPEGLYDVLTKYWNRY---HLYMYVTENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNYEWASGFSMRFGLLKVDYNT 450          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGAL_SULSH (Beta-galactosidase OS=Sulfolobus shibatae GN=bglY PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.298e-19
Identity = 62/220 (28.18%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   27 QAMHWMAIAHSKAYD-------------YIHAXXXXXXXXXVGVAHHVSFMRPYGLFDXXXXXXXXXXXXFPYVDSISDRLDFIGINYYGQEVVSGPGLKLVETDEY----------------SESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            +AM+ +  AH++AYD             Y ++         V       +   +  FD                D +  RLD+IG+NYY + VV            Y                S+ G   +P+GL+ VL ++  RY   +L   +TENG++D+ D  R  Y++ H+  V+ A+ +G  V GYL W+++DN+EWA G+  +FGL+ VD  T
Sbjct:  234 KAMYNIIQAHARAYDGIKSVSKKPIGIIYANSSFQPLTEKDVEAVEMAEYDNRWAFFDAIIRGEIMRGSEKVVRDDLRGRLDWIGVNYYTRTVVKKTEKGYTSLGGYGHGCERNSVSLAGLPTSDFGWEFFPEGLYDVLTKYWNRY---HLYMYVTENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYLHWSLADNYEWASGFSMRFGLLKVDYGT 450          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGAL_SULAC (Beta-galactosidase OS=Sulfolobus acidocaldarius GN=bgaS PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  210 DSISDRLDFIGINYYGQEVVSGPGLKLVETDEY----------------SESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            + + +RLD+IG+NYY + VV+      +    Y                S+ G   +P+GL+ VL ++  RY    LP  + ENG++D+ D  R  Y++ H+  V+ A+  GV V GYL W+++DN+EW+ G+  +FGL+ VD  T
Sbjct:  310 EDLRNRLDWIGVNYYTRTVVTKAESGYLTLPGYGDRCERNSLSLANLPTSDFGWEFFPEGLYDVLLKYWNRY---GLPLYVMENGIADDADYQRPYYLVSHIYQVHRALNEGVDVRGYLHWSLADNYEWSSGFSMRFGLLKVDYLT 452          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGLA_PAEPO (Beta-glucosidase A OS=Paenibacillus polymyxa GN=bglA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  207 VDSISDRLDFIGINYYGQEVVS-GPGLKLVETDEYS------ESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENG--VSDET------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            +D I + +D IGINYY   V    P    ++++E +      + G  V   GL+ VLH      K+ N+   ITENG  ++DE       D  R  Y+ +HL+ V+  +  G+ V GY+ W++ DN+EWA+GY  +FG++ VD  T
Sbjct:  281 MDIIGEPIDMIGINYYSMSVNRFNPEAGFLQSEEINMGLPVTDIGWPVESRGLYEVLHYLQ---KYGNIDIYITENGACINDEVVNGKVQDDRRISYMQQHLVQVHRTIHDGLHVKGYMAWSLLDNFEWAEGYNMRFGMIHVDFRT 423          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGLA_THEMA (Beta-glucosidase A OS=Thermotoga maritima GN=bglA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  207 VDSISDRLDFIGINYYGQEVVS----GPG-LKLVETD-EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFI-ITENGVSDET---------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            +  I +++DF+G+NYY   +V      P  +  VE D   +  G  + P+G++ +L +  E Y   N P + ITENG + +          D  R  Y+  H+   + A+  GVP+ GY  W++ DN+EWA+GY  +FG+V VD +T
Sbjct:  280 MSEIQEKIDFVGLNYYSGHLVKFDPDAPAKVSFVERDLPKTAMGWEIVPEGIYWILKKVKEEY---NPPEVYITENGAAFDDVVSEDGRVHDQNRIDYLKAHIGQAWKAIQEGVPLKGYFVWSLLDNFEWAEGYSKRFGIVYVDYST 423          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGAL_PYRWO (Beta-galactosidase OS=Pyrococcus woesei PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  231 DFIGINYYGQEVVS------------------------GPGLKLVETDEYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDETDLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            D+IG+NYY +EVV+                         PG    +    S+ G  +YP+G++  + + H+      +P  +TENG++D  D++R  Y+  H+     A   G  V GY  W ++DN+EWA G+  +FGL  V+  T
Sbjct:  335 DWIGVNYYTREVVTYQEPMFPSIPLITFKGVQGYGYACRPGTLSKDDRPVSDIGWELYPEGMYDSIVEAHK----YGVPVYVTENGIADSKDILRPYYIASHIKMTEKAFEDGYEVKGYFHWALTDNFEWALGFRMRFGLYEVNLIT 477          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGLA_THENN (Beta-glucosidase A OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=bglA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  207 VDSISDRLDFIGINYYGQEVV-----SGPGLKLVETD-EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET---------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            ++ I   +DF+G+NYY   +V     S   +  VE +   +  G  + P+G++ +L    E Y    +   ITENG + +          D  R  Y+  H+  V+ A+  GVP+ GY  W++ DN+EWA+GY  +FG+V VD  T
Sbjct:  278 MEEIKQEIDFVGLNYYSGHMVKYDPNSPARVSFVERNLPKTAMGWEIVPEGIYWILKGVKEEYNPQEV--YITENGAAFDDVVSEGGKVHDQNRIDYLRAHIEQVWRAIQDGVPLKGYFVWSLLDNFEWAEGYSKRFGIVYVDYNT 421          
BLAST of DR908610 vs. ExPASy Swiss-Prot
Match: BGLA_THENE (Beta-glucosidase A (Fragment) OS=Thermotoga neapolitana GN=bglA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  207 VDSISDRLDFIGINYYGQEVV-----SGPGLKLVETD-EYSESGRGVYPDGLFRVLHQFHERYKHLNLPFIITENGVSDET---------DLIRRPYVIEHLLAVYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRAT 599
            ++ I   +DF+G+NYY   +V     S   +  VE +   +  G  + P+G++ +L    E Y    +   ITENG + +          D  R  Y+  H+  V+ A+  GVP+ GY  W++ DN+EWA+GY  +FG+V VD  T
Sbjct:  278 MEEIKQEIDFVGLNYYSGHMVKYDPNSPARVSFVERNLPKTAMGWEIVPEGIYWILKGVKEEYNPQEV--YITENGAAFDDVVSEGGKVHDQNRIDYLRAHIEQVWRAIQDGVPLKGYFVWSLLDNFEWAEGYSKRFGIVYVDYNT 421          
The following BLAST results are available for this feature:
BLAST of DR908610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SFR2_ORYSJ1.719e-8876.00Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH1.232e-8675.63Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
BGAL_SULSO1.298e-1935.62Beta-galactosidase OS=Sulfolobus solfataricus GN=l... [more]
BGAL_SULSH1.298e-1928.18Beta-galactosidase OS=Sulfolobus shibatae GN=bglY ... [more]
BGAL_SULAC2.215e-1934.25Beta-galactosidase OS=Sulfolobus acidocaldarius GN... [more]
BGLA_PAEPO1.258e-1434.93Beta-glucosidase A OS=Paenibacillus polymyxa GN=bg... [more]
BGLA_THEMA2.145e-1433.33Beta-glucosidase A OS=Thermotoga maritima GN=bglA ... [more]
BGAL_PYRWO3.659e-1429.93Beta-galactosidase OS=Pyrococcus woesei PE=1 SV=1[more]
BGLA_THENN1.065e-1332.19Beta-glucosidase A OS=Thermotoga neapolitana (stra... [more]
BGLA_THENE1.065e-1332.19Beta-glucosidase A (Fragment) OS=Thermotoga neapol... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16738 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908610 ID=DR908610; Name=DR908610; organism=Citrus sinensis; type=EST; length=608bp
CTGCCTTACCTACTGGTGTTTTCAATCAAGCCATGCATTGGATGGCCATT
GCACACTCAAAGGCCTATGATTATATTCATGCAAAAAGCAGCACATCAAC
AAAGTCGAAGGTTGGGGTAGCACACCATGTATCATTTATGCGACCATATG
GTCTCTTTGATGTTGCTGCGGTTACATTGGCTAATACCCTTACCACCTTT
CCATATGTGGATAGTATCTCTGACAGGCTGGATTTTATAGGCATTAACTA
CTACGGACAGGAAGTGGTCTCTGGTCCTGGCTTGAAGCTAGTAGAGACTG
ATGAGTACAGTGAATCTGGACGTGGCGTATATCCTGATGGTCTGTTCCGT
GTGCTGCACCAGTTCCATGAAAGATACAAGCATTTGAACTTACCCTTCAT
CATAACAGAAAATGGGGTTTCTGATGAGACAGATCTGATTCGTCGACCAT
ATGTTATAGAACATTTGCTTGCTGTTTATGCTGCCATGATTACAGGTGTC
CCTGTGATTGGTTATCTTTTTTGGACTATTTCTGACAATTGGGAATGGGC
TGATGGGTATGGTCCCAAGTTTGGACTCGTTGCAGTGGACCGGGCAACAA
TCTTGCCC
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