DR908607

Overview
NameDR908607
Unique NameDR908607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1709 contig Csv1_Contig1709:97..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.096e-66
Identity = 124/126 (98.41%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    5 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 3.189e-66
Identity = 123/126 (97.62%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    5 SVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 9.277e-66
Identity = 122/126 (96.83%), Postives = 125/126 (99.21%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    5 SVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 3.525e-65
Identity = 121/126 (96.03%), Postives = 125/126 (99.21%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL+VMQKHGYIGEFEYVDDHR+GKIVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:    5 SVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.061e-61
Identity = 115/126 (91.27%), Postives = 121/126 (96.03%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHR+GKIVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct:    5 SVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 2.800e-54
Identity = 101/126 (80.16%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 4.776e-54
Identity = 100/126 (79.37%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL DAL ++ NAEK GKRQV++RPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    5 SVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 100/126 (79.37%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 8.146e-54
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
[Close]
BLAST of DR908607 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 378
            SVL DAL ++ NAEK GKRQV+IRPSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130
The following BLAST results are available for this feature:
BLAST of DR908607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
R15A1_ARATH1.096e-6698.4140S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_BRANA3.189e-6697.6240S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A4_ARATH9.277e-6696.8340S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
RS15A_DAUCA3.525e-6596.0340S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A3_ARATH1.061e-6191.2740S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS22A_YEAST2.800e-5480.1640S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22B_YEAST4.776e-5479.3740S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22_CANGA6.237e-5479.3740S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS22_KLUMA8.146e-5478.5740S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22_KLULA1.064e-5378.5740S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16735 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-41_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908607 ID=DR908607; Name=DR908607; organism=Citrus sinensis; type=EST; length=609bp
AGTGTTCTGAATGATGCTCTTAAGAGCATGTATAATGCCGAGAAAAGGGG
GAAGCGTCAGGTTATGATCAGACCATCCTCCAAGGTTATCATTAAGTTTC
TTCTGGTGATGCAAAAGCACGGGTACATTGGTGAGTTTGAGTATGTTGAT
GACCACAGAGCTGGTAAGATTGTGGTTGAACTGAATGGAAGATTGAACAA
ATGTGGGGTTATCAGTCCCCGTTTTGATGTTGGCGTCAAGGAGATTGAAG
GTTGGACTGCTAGGTTGCTTCCCTCAAGACAGTTTGGATACATTGTGCTG
ACAACTTCTGCTGGCATTATGGACCACGAAGAGGCGAGAAGGAAGAATGT
TGGTGGTAAAGTGCTTGGTTTTTTCTACTAGGCAAAGTTCATATTGAGAA
TGGGACTTGAGTTTTTTTTGTGTACTTTGGAAGAACTTGTTCACAAATGG
ATTAGCTTCTCTTTGTTTTACTTGATTTAATTATGCATTTTTAAACTCGG
ATTGGTACTTTTTAGTTGAAGAAAGATGATATTATGTGTTACACACATTT
ATCTCTTAGCAGTTGATTTGGTGATCAATTTTCCCAAGTTCTGTTAACAT
CTGATTGTG
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