DR908599

Overview
NameDR908599
Unique NameDR908599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig997 contig Csv1_Contig997:521..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908599 vs. ExPASy Swiss-Prot
Match: TAP46_ARATH (PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.044e-65
Identity = 126/202 (62.38%), Postives = 146/202 (72.28%), Query Frame = 3 
Query:    3 KLQEIKERKERRGRSTRAAAPSAPXXXXXXXXXXXXXXXXXXAWLTTISLAVCKAXXXXXXXXXXXXXXSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDAAIRAQYTKPAQPITCATFAQDVLEGRAKVSQAHEHKHQPMIFGPASLVGGGLTSERERMAAQVFQPMHRLPTMSIEEAGLKEMEMMNKWQEMNVKLMEE 608
            KL EIKERKERRGRST+A+A S P                  AWL++I+LA+CKA              SA+KERQLK GE  FS   LD+R+KKAE+WHRDAA R QY+KPAQPITCATFAQDVLEGRA VSQ HEHK+QP+IFGPAS+VGG L++ERERM AQVFQP HR+PTM IE+AGL EM +MN WQE   K +EE
Sbjct:  150 KLLEIKERKERRGRSTKASALSTPVESGEDDIPDDDSEEEREAWLSSINLAICKAIDLLEMLKREEEMLSAIKERQLKDGEGGFSRDALDDRTKKAETWHRDAAARIQYSKPAQPITCATFAQDVLEGRASVSQGHEHKNQPLIFGPASIVGGPLSTERERMIAQVFQPSHRMPTMCIEDAGLTEMNIMNDWQEQTKKAIEE 351
The following BLAST results are available for this feature:
BLAST of DR908599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TAP46_ARATH2.044e-6562.38PP2A regulatory subunit TAP46 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16727 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908599 ID=DR908599; Name=DR908599; organism=Citrus sinensis; type=EST; length=610bp
CAAAACTTCAGGAAATAAAGGAGCGGAAGGAGAGGCGTGGGCGTTCGACT
AGGGCAGCCGCTCCATCTGCTCCTGTTGAGGCTGGAGAGGAAGATGTGTT
GGATGATGATGGAGAAGAAGAAAGGGAGGCTTGGCTTACCACCATCTCAT
TGGCTGTTTGCAAGGCCCTTGATCTGCTAGAGATGCTGAAGAAAGAGGAA
GATATGCTTTCTGCTGTAAAAGAAAGACAATTAAAGGGAGGTGAGGAGGA
ATTTTCTGAGGTTGTCCTTGATGAGCGCTCCAAAAAAGCTGAATCTTGGC
ATCGTGATGCTGCTATTCGAGCTCAATACACAAAACCAGCACAGCCCATC
ACATGTGCTACTTTTGCACAGGATGTTCTAGAAGGAAGAGCCAAAGTCTC
ACAAGCACATGAGCACAAACACCAGCCAATGATATTTGGACCAGCAAGTC
TTGTTGGTGGAGGCCTGACAAGTGAGAGGGAAAGGATGGCAGCGCAGGTC
TTCCAACCTATGCATAGGTTGCCGACCATGAGTATAGAGGAAGCTGGGCT
GAAGGAGATGGAAATGATGAATAAATGGCAGGAGATGAATGTTAAACTCA
TGGAAGAAGC
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