DR908598

Overview
NameDR908598
Unique NameDR908598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908598 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 56/197 (28.43%), Postives = 105/197 (53.30%), Query Frame = 2
Query:   17 ALDELMK----LRQLRKLG-IRPQNGNGKDVCALIANLENLESLTVLMASKEEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIIKLKNVIRVGLDLSGLTEDPIRVLHALPNLLELRLGGTYNYELFHFEAGWFPKLQKLLLGVFEAVKSVIIEKGAMPDIRELKIGPCPLLMEIPIGIEHLKNLKLLNFSRMGKQV 592
            A DEL+K    + QL ++  +  +  +G+D+C  +  ++ +  L++    +EE L++  L +    +++L+L G ++++P W   L+N+  +GL  S L E+ I  +  LP L+ L     Y      F  G F  L+ L +   + +  V+IE GAM ++++L +  C  L  +P GIE+L NL+ L+   +  Q+
Sbjct:  694 AEDELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATAS-IEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQG-FQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQL 888          
BLAST of DR908598 vs. ExPASy Swiss-Prot
Match: DRL11_ARATH (Probable disease resistance protein RDL6/RF9 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 51/179 (28.49%), Postives = 92/179 (51.40%), Query Frame = 2
Query:   29 LMKLRQLRKLGIRPQNGNGKDVCALIANLENLESLTVLMASKEEILDLQSLSSPPQYLQRLYLTGNMKKLPDWIIKLKNVIRVGLDLSGLTEDPIRVLHALPNLLELRL-GGTYNYELFHFEAGWFPKLQKLLLGVFEAVKSVIIEKGAMPDIRELKIGPCPLLMEIPIGIEHLKNLKL 562
            L KL QL++L +R ++ +GK++         L+ L++    + E   ++  S P  +   +     +K+LPD  +   ++  + L    L EDP+  L  L +L EL+L   +++  +       FP+L KL L   + ++  I+E G+MP +  L+I  CP L ++P G   L+NL+L
Sbjct:  797 LEKLHQLKELELRRKSFSGKEMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLP-SHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAGSGFPQLHKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLEL 974          
BLAST of DR908598 vs. ExPASy Swiss-Prot
Match: RPP8_ARATH (Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 50/195 (25.64%), Postives = 99/195 (50.77%), Query Frame = 2
Query:   17 ALDELMKLRQLRKLGIR-PQNGNGKDVCALIANLENLESLTVLMASKEEILDLQSLSSPPQY--LQRLYLTGNMKKLPDWIIKLKNVIRVGLDLSGLTEDPIRVLHALPNLLELRLGG-TYNYELFHFEAGWFPKLQKLLLGVFEAVKSVIIEKGAMPDIRELKIGPCPLLMEIPIGIEHLKNLKLLNFSRMGKQ 589
            ++ +L+++ +LR L +   +  N + + + +  L NLE+L  L + +  ++D         +  L++L L   M K+PD      +++ + L   G+ EDP+ +L  L +L  +RL    +         G FP+L  + +     ++  I+E+G+MP +R L I  C  L E+P G++++ +LK L    M ++
Sbjct:  686 SVTDLLRMTKLRYLAVSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKRE 880          
The following BLAST results are available for this feature:
BLAST of DR908598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPM1_ARATH2.562e-1528.43Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
DRL11_ARATH4.090e-1328.49Probable disease resistance protein RDL6/RF9 OS=Ar... [more]
RPP8_ARATH6.530e-1125.64Disease resistance protein RPP8 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16726 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908598 ID=DR908598; Name=DR908598; organism=Citrus sinensis; type=EST; length=610bp
AGAAGCTGACTCTCAAGCGCTTGACGAGCTTATGAAGCTAAGGCAGTTAA
GAAAGTTGGGCATTAGGCCCCAAAATGGAAATGGCAAGGATGTGTGTGCT
TTGATTGCAAATTTGGAAAACCTAGAGTCTTTAACAGTGTTAATGGCAAG
CAAAGAAGAAATACTTGACTTGCAGTCTTTGAGTAGTCCTCCTCAATATC
TGCAGCGTCTCTACTTGACGGGGAATATGAAGAAACTGCCGGATTGGATT
ATTAAACTAAAAAATGTAATCAGAGTGGGTTTGGACTTGTCGGGATTGAC
TGAGGATCCAATCAGAGTCCTTCACGCCTTGCCTAATTTATTGGAACTTA
GACTCGGGGGGACATACAACTACGAGCTTTTTCACTTTGAAGCAGGTTGG
TTTCCAAAACTCCAAAAGTTGCTTCTCGGGGTCTTCGAGGCTGTGAAATC
GGTTATAATAGAGAAAGGTGCGATGCCTGATATTAGAGAACTGAAGATTG
GGCCTTGCCCATTGTTGATGGAGATTCCTATTGGAATTGAACATCTTAAA
AACCTTAAGCTACTCAACTTTTCTCGTATGGGTAAACAAGTTTATTACAT
GGCAAAAGAC
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