DR908592

Overview
NameDR908592
Unique NameDR908592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908592_ssr541 microsatellite DR908592_ssr541:541..552. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13796 contig Csv1_Contig13796:782..1392. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 3
Query:    3 YVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 266
            YVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  243 YVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.312e-24
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 3
Query:    3 YVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            Y RNDR TPMV+DN YY+NI+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  243 YSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 VRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            V ND  TP   DN Y++NI    GL+  DH L +D RTRP+V+  A+ Q  FF +F+ A+  LS +  LTG +GEIR+ C+  N
Sbjct:  245 VFNDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 VRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            V ND  TP   DN YY+N+    GL+  DH L +D RTR +V   AK+QD FFK+F++A+  LS     TG +GEIR+ C+  N
Sbjct:  233 VFNDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 31/82 (37.80%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   15 DRGTPMVLDNNYYRNILDNKGLMMVDHQLAT-DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            D  TP   DN+Y++N++  KGL+  D  L T +K+++  V+  A++Q+ FF++F++++  +   +PLTG KGEIR++C   N
Sbjct:  252 DFATPFKFDNHYFKNLIMYKGLLSSDEILFTKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 3
Query:   12 NDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            ND  TP   DN YY+N+    GL+  DH +A D RTR  V   A+ +  FF  F++A+  +SE N  TG  GE+R+ C+  N
Sbjct:  241 NDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 3
Query:    3 YVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 248
            +V ND+ T ++ D  YY + +  +G + +D ++  D RTRP+V+  A  QD FF  FS A   LS    LTG +G IR VC+
Sbjct:  256 FVPNDQ-TSVIFDTAYYDDAIAGRGNLRIDSEIGADPRTRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCD 336          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 3
Query:    6 VRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            V ND  T  V DN YYRN+  +KGL   D  L  D RTR  V+++A  ++ FF+ +S +   LS      G  GEIR+ C+  N
Sbjct:  243 VSNDPETSAVFDNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of DR908592 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 3
Query:   12 NDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 257
            ND  +P V DN YY ++++ +GL   D  L  DKRTR  V+  A  Q  FF  F+ A+  + + + LTGT+GEIR  C+  N
Sbjct:  258 NDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
The following BLAST results are available for this feature:
BLAST of DR908592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PER42_ARATH9.667e-3986.36Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH2.312e-2460.00Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER63_ARATH1.190e-1245.24Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER31_ARATH1.190e-1246.43Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER72_ARATH3.828e-1137.80Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER6_ARATH6.530e-1141.46Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER29_ARATH6.530e-1140.24Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER46_ARATH8.528e-1140.48Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER12_ARATH8.528e-1141.46Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16720 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-29_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908592 ID=DR908592; Name=DR908592; organism=Citrus sinensis; type=EST; length=611bp
AGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTGGACAACAACTAC
TATAGGAACATATTGGACAACAAGGGCTTGATGATGGTTGATCATCAGCT
AGCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGATGGCCAAGAGTC
AAGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACTCTCCTTTCTGAG
AACAACCCTCTCACAGGTACAAAGGGTGAGATCCGAAAGGTTTGCAATCT
TGCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACAGCTGTATTAGCT
ACAACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTTCTTCTATGAGGA
AGAAAAGAGTGTGAGATGAGCTCCCAATAAGATGGTTTTTCTAGATCGGT
TTGTTTCCTGTGAGATGTTCGTATTACTGCTATTATGTTCCTTAGATGTA
CCGTCCAATGTTTAAGCCTAGGCTTTCCTTTTCCTCGATGGTGTGAGCTT
GATGTTATTAATATTCAGTAATGGCAGTGGTAGATGAGGGATGTATGTAT
GTATGCAGGGATGGTGTATGGTGCATGGATTTGTATAATGATGATAATTG
ATGATTCATGC
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