DR908585

Overview
NameDR908585
Unique NameDR908585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:35..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.299e-71
Identity = 130/145 (89.66%), Postives = 132/145 (91.03%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFLSS             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.578e-71
Identity = 128/145 (88.28%), Postives = 132/145 (91.03%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFL+S             NRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.383e-69
Identity = 128/145 (88.28%), Postives = 130/145 (89.66%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFLS+             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 5.256e-69
Identity = 126/145 (86.90%), Postives = 129/145 (88.97%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 8.965e-69
Identity = 124/145 (85.52%), Postives = 130/145 (89.66%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 3.766e-67
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIP
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIP 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51
Identity = 98/145 (67.59%), Postives = 114/145 (78.62%), Query Frame = 2
Query:   56 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 490
            MAEQTEKAF KQ  V                 +RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIP 144          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.149e-46
Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 2
Query:   65 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 484
            QTE+A+ KQP +F +               R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKV 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.806e-46
Identity = 87/141 (61.70%), Postives = 108/141 (76.60%), Query Frame = 2
Query:   65 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 484
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145          
BLAST of DR908585 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.806e-46
Identity = 87/141 (61.70%), Postives = 108/141 (76.60%), Query Frame = 2
Query:   65 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 484
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145          
The following BLAST results are available for this feature:
BLAST of DR908585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_MAIZE4.299e-7189.6640S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS11_EUPES9.578e-7188.2840S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN1.383e-6988.2840S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS113_ARATH5.256e-6986.9040S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH8.965e-6985.5240S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH3.766e-6784.8340S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE3.784e-5167.5940S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA2.149e-4660.9940S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT2.806e-4661.7040S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE2.806e-4661.7040S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16713 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-20_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908585 ID=DR908585; Name=DR908585; organism=Citrus sinensis; type=EST; length=612bp
CCACCTCCGCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATC
CAGCCATGGCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTG
TTTCTCAGCTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGG
GAATCGATTCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGG
CAATTGAAGGGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTT
TCCATCAGGGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAA
CAGAACCATCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATC
AGAGGTATGAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGT
TTCCGTGTGAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTT
GTCAAAGACGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTT
CTGGTGGTGCAAGAAGGCATTCACGGCGATGTGAGTTGGAGTCCGCTGTT
TCCAACATTAAATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGG
ATTTTTGCATTG
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