DR908577

Overview
NameDR908577
Unique NameDR908577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12874 contig Csv1_Contig12874:89..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: APRR2_ARATH (Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.045e-37
Identity = 83/151 (54.97%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  166 SKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQ---MLRNY----YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWA-PPGYP 591
            +K+SG++N  GNK +RKK  VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKV  LTRHNVASHLQK+R HR++ILPK+D + +W  +R+      RNY      H+P+MA+P +    + P G + P+W  P   +     W   P YP
Sbjct:  281 NKSSGIKNVSGNKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRENHRPNQRNYNVFQQQHRPVMAYPVWGLPGVYPPGAIPPLWPPPLQSIGQPPPWHWKPPYP 429          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  178 GLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGY 588
            G +        RKK +V W+ ELH+KFV AV+QLG+D+A+P +IL+LM +EGLTR NVASHLQKYR++ + I   +     P A      +Y+    +     + +   +P+  +        +HL  +Q   PP Y
Sbjct:  181 GSEQDGDGSGTRKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKKIDEGQQQNMTPDAFGTRDSSYFQMAQLDGLRDFTAARQIPSSGL-----LSRSHLTKLQ---PPMY 309          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  205 ANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 393
            +N KK +V W+ ELH++FV AV QLGV++A+P +ILELM V GLTR NVASHLQKYR++ R +
Sbjct:  233 SNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL 295          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   10 GTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 393
            G++++    R R+   +E+ D  + S  E N            G +       +     +   + ++ KK +V W+ ELH++FV AV QLGVD+A+P +ILE+M V GLTR NVASHLQKYR++ R +
Sbjct:  159 GSIEDTGGDRDRQQQHREDADNNSSSVNEGN------------GRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 48/126 (38.10%), Postives = 72/126 (57.14%), Query Frame = 1
Query:   16 LQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 393
            L+++K     ET+V         S +EC+   L   ++  K     ++       L    GN    KK +V W+ ELH++FV AV +LG+D+A+P RILELM V GL+R NVASHLQK+R++ + +
Sbjct:  144 LEDNKNSGSLETVVV--------SVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNS---KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  211 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 393
            +KK +V WT ELHKKFV AV QLG ++A+P +IL+LM VE LTR NVASHLQK+R++ + I
Sbjct:  193 QKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:  121 EKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTG 516
            +K N K      E   +  G  N   +   +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + +      +    A D         K +  F  YH +  +P G
Sbjct:  153 DKANRKRKEQYEEEEEEERGNDND--DPTAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQANRAAIDSHFMQMNSQKGLGGF--YHHHRGIPVG 280          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: ARR20_ARATH (Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  115 PYEKDNLKGSNCVIENPSKASGLQNSCGNKANR---KKMKVDWTPELHKKFVQAVEQLG-VDQAIPSRILELMK----VEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPT 513
            P E D+L+  N    N     G +N+C +K  +   KK ++ WTPELH KF  AVE++G +++A P  IL+ M+    V+GLTR+NVASHLQKYR   +     ++ ++     D +  N  P   + A     S+H  P+
Sbjct:  177 PDEYDDLEQDNLYESNEE---GSKNTCDHKEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQSSKKTCTPQEPQE-----DFVWGNAGPDVTLAASKTLLSSHATPS 309          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   25 DKPQRPRETIVKEEHDP--TNGSKTECNMLPLPYE-KDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 399
            +KP  P   +      P  T  + TE ++ PL  E +D++   N  I +                  K ++ WT +LH++F+ AV  LG D+A+P +IL +MKV+ LTR  VASHLQKYRM  +  +P
Sbjct:  144 EKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLG-------------KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258          
BLAST of DR908577 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSI (Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   25 DKPQRPRETIVKEEHDP--TNGSKTECNMLPLPYE-KDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 399
            +KP  P   +      P  T  + TE ++ PL  E +D++   N  I +                  K ++ WT +LH++F+ AV  LG D+A+P +IL +MKV+ LTR  VASHLQKYRM  +  +P
Sbjct:  144 EKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLG-------------KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSIP 258          
The following BLAST results are available for this feature:
BLAST of DR908577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
APRR2_ARATH4.045e-3754.97Two-component response regulator-like APRR2 OS=Ara... [more]
ARR18_ARATH1.224e-1736.50Two-component response regulator ARR18 OS=Arabidop... [more]
ARR1_ARATH8.768e-1661.90Two-component response regulator ARR1 OS=Arabidops... [more]
ARR2_ARATH1.145e-1536.72Two-component response regulator ARR2 OS=Arabidops... [more]
ARR14_ARATH4.352e-1538.10Two-component response regulator ARR14 OS=Arabidop... [more]
ARR12_ARATH4.352e-1562.30Two-component response regulator ARR12 OS=Arabidop... [more]
ARR10_ARATH4.811e-1436.36Two-component response regulator ARR10 OS=Arabidop... [more]
ARR20_ARATH1.400e-1336.17Putative two-component response regulator ARR20 OS... [more]
EHD1_ORYSJ2.388e-1335.16Two-component response regulator EHD1 OS=Oryza sat... [more]
EHD1_ORYSI2.388e-1335.16Two-component response regulator EHD1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16705 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-54_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908577 ID=DR908577; Name=DR908577; organism=Citrus sinensis; type=EST; length=614bp
ATTGCTGAAGGAACATTACAGGAAGACAAACCTCAGAGACCAAGGGAAAC
TATAGTCAAAGAGGAGCATGACCCAACTAATGGTTCCAAGACTGAGTGCA
ACATGCTTCCTCTTCCGTACGAGAAAGATAATCTCAAAGGTTCTAATTGC
GTCATTGAAAACCCAAGTAAAGCTTCTGGTCTTCAGAACTCTTGCGGAAA
TAAAGCTAATCGAAAGAAGATGAAGGTGGACTGGACGCCTGAATTGCACA
AAAAATTTGTGCAGGCTGTGGAGCAACTTGGCGTAGATCAAGCCATTCCT
TCTCGGATACTAGAGCTGATGAAAGTGGAAGGACTGACTAGGCATAATGT
AGCAAGTCATCTCCAGAAATATCGAATGCATAGGAGACACATCTTACCCA
AAGAAGATGACCGAAAATGGCCACACGCAAGAGATCAAATGCTAAGGAAT
TATTATCCGCATAAACCTATAATGGCATTCCCGCCGTACCATTCTAATCA
CCTAGTCCCGACTGGTCCTGTCTATCCTGTCTGGGGAGCACCGAGTAATC
ACCTGGCTGCTGTCCAGATGTGGGCCCCACCTGGATATCCCCCATGGCAG
CAAGCAGAGAGTTG
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