DR908566

Overview
NameDR908566
Unique NameDR908566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6365 contig Csv1_Contig6365:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908566 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 64/89 (71.91%), Postives = 79/89 (88.76%), Query Frame = 2
Query:   20 MSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 286
            ++  +S LI+++++VKIIGWDAMIRIQ SK+NHP AK MEALKELDLEVNHAS+SVVNDLMIQQATVKMG++F+TQ+QLK  L  KVG+
Sbjct:  499 LNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVGE 587          
BLAST of DR908566 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 SDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 283
            S  D+  S  + K + ++IEVKIIGWDAMIR++SSK+NHPAA+LM AL +L+LEVNHASMSVVNDLMIQQATVKMG R YTQEQL+  L +K+G
Sbjct:  530 SGGDMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYTQEQLRASLISKIG 623          
BLAST of DR908566 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.729e-28
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 2
Query:    8 QDLKMSNHASKL--IDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 286
            ++ K SN  S    I+++I+VKIIGWD MIR+Q  KK+HP A+ MEALKELDLEVNHAS+SVVNDLMIQQATVKMGS+F+  +QLK  L  KVG+
Sbjct:  496 KERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKVGE 590          
BLAST of DR908566 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 2
Query:   17 KMSNHASKLIDLDIEVKII-GWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 280
            K    AS++  + IEVKI+   DAM+R++S K +HP A+LM AL +L+LEVNHAS+SV+NDLMIQQA VKMG R Y QE+L+++L +K+
Sbjct:  424 KYEEKASEM--MKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLRIYKQEELRDLLMSKI 510          
The following BLAST results are available for this feature:
BLAST of DR908566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BH004_ARATH4.379e-3171.91Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH1.840e-2968.09Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH7.729e-2865.26Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH2.944e-1956.18Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16694 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908566 ID=DR908566; Name=DR908566; organism=Citrus sinensis; type=EST; length=616bp
ATCTGATCAAGACCTTAAAATGTCAAACCATGCTAGTAAATTGATTGACT
TGGATATTGAGGTGAAGATAATTGGATGGGATGCGATGATTAGGATTCAA
TCTAGTAAGAAGAACCATCCTGCAGCGAAGTTAATGGAAGCCTTGAAAGA
GTTGGACTTGGAAGTGAATCATGCAAGTATGTCTGTGGTGAATGATTTGA
TGATCCAACAAGCTACTGTAAAGATGGGAAGTCGGTTTTACACGCAGGAG
CAGCTAAAGAACGTCCTTGCAGCCAAAGTTGGAGATACCCAATAAAGAGT
TGGGATCAGGATTTCATTGTTAATGGCATTCAGCTCTGGGACATTTTAAG
GCTTCCCGGTAGCGCTCAAAGCTTTGTAATATAGCATATTTTCATGTTCT
ACTATTTGTTCTTTAGTAGTTGTTAGTGTAATTCTAGTTTTGAGATGATT
TAAAAAATGTTAAGGGAGCTGAGTTATTGAGCAGTAGTAGTAGGTATGTG
TTTAAGGAATGAGTATTCTTGGGCTCCGATCTAGTGAAAATAGCTTTTTT
GATGTTGAAATTTAGTACGTCCTCTATGTATATAATTATAAAATTTGAGC
CTGATCAAAAAAAAAA
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