DR908562

Overview
NameDR908562
Unique NameDR908562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.778e-32
Identity = 68/157 (43.31%), Postives = 102/157 (64.97%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERI 472
            S RVSNELGAGNP+ A L+  VV +  V  + ++  I+   R  L+ AF SD +V+  VS+L PLL+ SI ++ +Q +LSGVA G+GWQ + AYVNL  YY++G+P+  VL F  +L   G+W G++ G  +Q + L ++T+ TNW  +   A +R+
Sbjct:  336 SVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.749e-25
Identity = 65/159 (40.88%), Postives = 89/159 (55.97%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFE 478
            +TRV N +GAGN + A+LA  V + L     VI+  ILF  R    Y F SDKDVV  V+ ++PL++   I D+ Q V  G+ RG G Q IG  VN  AYY++G+P+A +LCF L+    GLWIGI     + A V    ++  NW     +A  +  E
Sbjct:  380 ATRVGNLIGAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATIIPLVALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGLWIGIGAAILIIAGVETWCSLHVNWDHLVELANRQFDE 538          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 54/154 (35.06%), Postives = 89/154 (57.79%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMAR 463
            S RV N LGAG+ + A+ ++ V +++ V  AV    +L  C+  + Y F +D+D++N V+++VP+ + S + ++L     GV RG+G Q +GA VN   YY+VG+P+   L F   L   GLW GI+  +  QA+      +  NW+K  + A+
Sbjct:  317 SVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATKLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKKACQQAQ 470          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 54/154 (35.06%), Postives = 89/154 (57.79%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMAR 463
            S RV N LGAG+ + A+ ++ V +++ V  AV    +L  C+  + Y F +D+D++N V+++VP+ + S + ++L     GV RG+G Q +GA VN   YY+VG+P+   L F   L   GLW GI+  +  QA+      +  NW+K  + A+
Sbjct:  317 SVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATTLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKKACQQAQ 470          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.843e-24
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMAR--ERIFEGTYSAGNRSV 508
            + RV N LGAGN + A+ ++ V +++    AV+   +L  C+ ++ Y F SD+D++  V+++ P+ + S + +SL     G+ RG+G Q  GA VN   YY+VG+P+   L F   L   GLW+GI+  +  QA+         NW K  + AR    +   T S GN +V
Sbjct:  316 NVRVGNALGAGNIEQAKKSSAVALLVTELIAVVFCVMLLSCKDLVGYIFTSDRDIIALVAQVTPIYAVSHLFESLAGTSGGILRGSGNQKFGAIVNAIGYYVVGLPIGIALMFAAKLGVIGLWLGIVVCAVSQAVCFLGFIARLNWTKACQQARVHANLTVNTASNGNSAV 486          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARER 469
            S RV N LGAGN   A+ +   V++ A   A++VG +L   + V+AY F +DKD+++ VS+++P+ +   + D+L     GV RGTG Q IGA +N   YY  G P+   L F   L   GLW G++   + QA    I  + TNW + A  A+ R
Sbjct:  326 SVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDIISLVSQVMPIFAPFHLFDALAGTCGGVLRGTGKQKIGAVLNTIGYYGFGFPIGVSLMFAAKLGIIGLWAGLIVCVSFQAFSYLIYILRTNWSRVAEQAQVR 481          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.732e-23
Identity = 53/153 (34.64%), Postives = 89/153 (58.17%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMA 460
            S RV N LGAGN + A+L+A V +V  V  + +V T++ C + V+AY F +++++V+ VS+++ +  F  + D++  +  G+ RG G Q +GA  N+  YY VG P    L F L++   GLWIG      +Q++   I+    +W+K  + A
Sbjct:  335 SVRVGNALGAGNTERAKLSAKVALVCGVLVSCVVATLIGCTKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGITGGIVRGAGKQLLGALCNIVGYYFVGFPTGVSLMFALSMGIIGLWIGFFGCVFLQSLFFIILIYKLDWKKATQEA 487          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMAR 463
            + RV N LGAGN   A+ ++ + +++    AV    +L  C+ ++ Y F +D D+V  V+++VP+ + S + ++L     GV RGTG Q +GA VN   YY++G+P+   L FV  L   GLW GI+  S  Q     +     NW+   + A+
Sbjct:  316 NVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIVALVAQVVPIYAVSHLFEALACTCGGVLRGTGNQKVGAIVNAIGYYVIGLPIGISLMFVAKLGVIGLWSGIIICSVCQTSCFLVFIARLNWKLACQQAQ 469          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.108e-21
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 2
Query:    2 STRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMAR 463
            + RV N LGAGN   A+ ++ + +++    AV    +L  C+ ++ Y F +D+D+V  V++++P+ + S + + L     G+ RGTG Q +GA VN   YY++G+P+   L F   L   GLW GI+  +  Q           NW++  + A+
Sbjct:  317 NVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIGLPIGIALMFAAKLGVIGLWSGIIICTTCQTTCFLAFIARLNWKRACQQAQ 470          
BLAST of DR908562 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 53/153 (34.64%), Postives = 88/153 (57.52%), Query Frame = 2
Query:    8 RVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARE 466
            RV   LGA +   A+ +A   ++     +++VGT+L      L Y F SD++V+  V++++P+     +++++  V  GV RGTG Q  GA VN   YYIVG+PL  VL FV+ +R  GLW+G++T   + A+   +  V  +W+  A  A++
Sbjct:  344 RVGTALGAADTLQAKRSAVSGLLCTAGTSLVVGTLLGLLNSQLGYIFTSDEEVIALVNQVLPIYIVFQLVEAVCCVFGGVLRGTGKQAFGAIVNAIMYYIVGLPLGIVLTFVVGMRIMGLWLGMLTCIFLAAVTFVVYAVQLDWKLAAEEAQK 496          
The following BLAST results are available for this feature:
BLAST of DR908562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TT12_ARATH1.778e-3243.31Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO2.749e-2540.88Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_PONAB3.969e-2435.06Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_HUMAN3.969e-2435.06Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RABIT8.843e-2433.92Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A2_MOUSE2.573e-2337.82Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_DANRE5.732e-2334.64Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_RAT2.408e-2133.77Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
S47A1_MOUSE4.108e-2131.17Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A2_RABIT7.007e-2134.64Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16690 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908562 ID=DR908562; Name=DR908562; organism=Citrus sinensis; type=EST; length=616bp
AAGCACTCGGGTATCAAATGAATTAGGAGCTGGCAATCCACAGGCAGCTC
AGTTGGCTGCCTGTGTCGTGATGGTTCTTGCAGTCACAGAGGCTGTCATA
GTGGGCACAATTCTCTTCTGCTGCCGCTATGTATTGGCATATGCATTCAA
CAGTGACAAGGACGTTGTGAATTATGTCAGTGAATTAGTTCCTCTGCTGA
GTTTCTCTATTATCATGGACAGTCTTCAATCAGTACTATCCGGAGTCGCT
AGAGGAACTGGGTGGCAGCACATAGGGGCTTATGTAAATCTTGGTGCGTA
TTATATTGTTGGAATTCCATTAGCATCTGTGTTATGTTTTGTTCTTAATC
TTAGAGGAAAAGGCCTTTGGATTGGAATAATGACCGGCTCAGCTGTACAA
GCAATTGTGCTTGCAATCATTACTGTTACCACAAATTGGCGAAAGCAGGC
GAGAATGGCAAGGGAGAGGATATTTGAGGGAACATATTCAGCTGGTAATA
GATCGGTTTGATTTGATGTAATAAAGTAATTAACTGCACAATTATGTTGC
CATCATAACAAGATTTCTTAGATGACAGCTACAAGCTGGATTCCACAATG
ACATTATTGCATTAAT
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