DR908558

Overview
NameDR908558
Unique NameDR908558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7966 contig Csv1_Contig7966:353..969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK70_ARATH (Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.965e-31
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 3
Query:   18 SDDYRRRSEDSGESKKRPAAKDSVSKRGCYKRKKNSQTWTVVSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCRDIISFPQ 359
            S D   + EDSG+S+KR        KRGCYKRKK S+T T+ S+   D  +WRKYGQKEILN K PRSYFRCTHKY QGC+ATKQVQ+ + +P+M+  TYIG+HTC      P+
Sbjct:   76 SCDNDGKFEDSGDSRKRLGPVKG--KRGCYKRKKRSETCTIESTILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCNTNAETPK 187          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK54_ARATH (Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 59/97 (60.82%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   45 DSGESKKRPAAKDSVSKRGCYKRKKNSQTWTVVSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTC 335
            DSGESKK+        KRGCY RK  S    V + +S D +AWRKYGQKEILNT  PRSY RCTHK  QGC+ATKQVQ++D D +M+  TYIG+HTC
Sbjct:  116 DSGESKKKRLGVGK-GKRGCYTRKTRSHARIVEAKSSEDRYAWRKYGQKEILNTTFPRSYLRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHTC 211          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK46_ARATH (Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 3
Query:    3 SCNVNSDDYRRRSEDSGESKKRPAAKDSVSKRGCYKRKKNSQTWTVVSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCRDIIS 350
            S N + +  +R  E  G+  K    K  VS++   K K    T    + + +DGH WRKYGQKEI  +K+PR+Y+RCTH++ Q C A KQVQ+ D DP +++  Y+G+HTC +I S
Sbjct:   54 SFNQDKNILKRSLEIDGKDSKNVFKKRKVSEKNTEKVKVFVAT-EQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHRFTQDCLAVKQVQKSDTDPSLFEVKYLGNHTCNNITS 168          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 3
Query:    9 NVNSDDYRRRSEDSGESKKRPAAKDSVSKRGCYKRKKNSQTWTV---------VSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCRDIIS 350
            ++N         D G S +    +D +      K++K    W+          +    +D  +WRKYGQK+IL  K PRSY+RCTH+  Q C ATKQVQR D D  +++ TY G HTC   I+
Sbjct:  103 SINGSPRSEEFADGGGSSESHHRQDYIFNS---KKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQAIT 222          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK41_ARATH (Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  108 KRKKNSQTWTV---------VSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCRDIISFPQ 359
            K++K    WT          +    +D  +WRKYGQK+IL  K PRSY+RCT +  Q C ATKQVQR D DP +++ TY G HTC   I  P+
Sbjct:  116 KKRKMLPKWTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRNTQYCWATKQVQRSDGDPTIFEVTYRGTHTCSQGIPLPE 208          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK55_ARATH (WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  156 NDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTC 335
            +D H WRKYGQKEIL ++ PR+Y+RCTH+ +  C A KQVQR +DDP  +  TY G HTC
Sbjct:  173 DDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTC 232          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK30_ARATH (Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:   39 SEDSGESKKRPAA-KDSVSKRGCYKRKKNSQTWTVVSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTC 335
            S  S +S + P   K S      +  K        V  T +DG +WRKYGQK+IL  K PR Y+RCT++  QGC ATKQVQR D++  + + +Y G H+C
Sbjct:   73 SPKSDDSDQEPLVIKSSKKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHSC 172          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK38_ARATH (Probable WRKY transcription factor 38 OS=Arabidopsis thaliana GN=WRKY38 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 41/115 (35.65%), Postives = 56/115 (48.70%), Query Frame = 3
Query:   45 DSGESKKRPAAKDSVSKRGCYKRKKNSQTWTVVSSTS--NDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCRDIISFPQIVAESSEP 383
            D       P  + S SK+       +S+ W   S      DG+ WRKYGQK I  + H RSY+RC++     C A K  Q+  D+P +Y TTY GHHTC+   +   I     +P
Sbjct:   71 DLSSRDSSPPPQGSPSKKRKIDSTNSSENWRDDSPDPIYYDGYLWRKYGQKSIKKSNHQRSYYRCSYNKDHNCEARKHEQKIKDNPPVYRTTYFGHHTCKTEHNLDAIFIAGQDP 185          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK67_ARATH (Probable WRKY transcription factor 67 OS=Arabidopsis thaliana GN=WRKY67 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 39/87 (44.83%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  156 NDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCR-----------DIISFPQIVAESSEP 383
            NDG  WRKYGQK I  + H R Y+RCT+   Q C ATK+VQ+  D+P +Y TTY+G H C+            +I F Q+V E   P
Sbjct:  108 NDGFTWRKYGQKTIKASAHKRCYYRCTYAKDQNCNATKRVQKIKDNPPVYRTTYLGKHVCKAFAVHDDTYSSTMIRFDQVVPEPIMP 194          
BLAST of DR908558 vs. ExPASy Swiss-Prot
Match: WRK63_ARATH (Probable WRKY transcription factor 63 OS=Arabidopsis thaliana GN=WRKY63 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 3
Query:    9 NVNSDDYRRRSEDSGESKKRPAAKDSVSKRGCYKRKKNSQTWTVVSSTSNDGHAWRKYGQKEILNTKHPRSYFRCTHKYVQGCRATKQVQRRDDDPQMYDTTYIGHHTCR-----------DIISFPQIVAES 374
            +VNS + +   E S         + S  K+ C  +          +   +DG  WRKYGQK I  + + R Y+RC +   Q C ATK+VQ   D P +Y TTY+G HTC+           ++I+F Q+V+ES
Sbjct:   54 SVNSPNRQPHHESSSRDMAGLVPQRSSKKKICGVKGLEIYRDDSPNPRLDDGFTWRKYGQKTIKTSLYQRCYYRCAYAKDQNCYATKRVQMIQDSPPVYRTTYLGQHTCKAFGVHDNTYGSEMINFDQVVSES 186          
The following BLAST results are available for this feature:
BLAST of DR908558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
WRK70_ARATH1.965e-3157.02Probable WRKY transcription factor 70 OS=Arabidops... [more]
WRK54_ARATH2.034e-2860.82Probable WRKY transcription factor 54 OS=Arabidops... [more]
WRK46_ARATH2.408e-2142.24Probable WRKY transcription factor 46 OS=Arabidops... [more]
WRK53_ARATH1.367e-1636.59Probable WRKY transcription factor 53 OS=Arabidops... [more]
WRK41_ARATH1.786e-1645.16Probable WRKY transcription factor 41 OS=Arabidops... [more]
WRK55_ARATH3.979e-1658.33WRKY transcription factor 55 OS=Arabidopsis thalia... [more]
WRK30_ARATH5.196e-1642.00Probable WRKY transcription factor 30 OS=Arabidops... [more]
WRK38_ARATH4.399e-1535.65Probable WRKY transcription factor 38 OS=Arabidops... [more]
WRK67_ARATH5.745e-1544.83Probable WRKY transcription factor 67 OS=Arabidops... [more]
WRK63_ARATH1.280e-1433.83Probable WRKY transcription factor 63 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16686 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908558 ID=DR908558; Name=DR908558; organism=Citrus sinensis; type=EST; length=617bp
ATTCTTGTAATGTTAATTCCGATGACTATCGCCGGAGATCGGAAGATTCC
GGGGAGAGTAAGAAGAGGCCGGCGGCGAAGGACAGTGTCAGTAAGAGAGG
ATGCTACAAGAGAAAGAAAAATTCGCAAACATGGACAGTAGTTTCTTCAA
CCAGTAATGATGGTCATGCATGGAGAAAATATGGCCAAAAGGAGATCCTC
AATACTAAACATCCAAGGAGCTACTTCAGGTGTACGCATAAGTATGTGCA
GGGCTGCCGGGCAACGAAACAAGTTCAAAGAAGAGACGATGATCCACAAA
TGTATGATACAACATACATAGGCCATCATACCTGCAGAGATATCATCAGC
TTCCCACAAATTGTGGCTGAAAGTTCTGAGCCTAATTGGGGTAGTACTAT
TAGCACTGGTGGTTCTTTTGTAGTGAGTTCCTCGTCTAGCATCCCGACAG
AAGAAATCAAACAAGAATGCAAGGAAGAGACAACAAGCACAGATCATCAA
GATTTGTCCTCTCTGGATTCAATTGCGTGGGAAGATTTTGTTTCTTTTCA
ATCATCTGATGAGCCAGAAGCAGCAGCCATGGTGTTTTCATGTAACAATA
ACAAGATGATCTCTTCT
back to top