DR908549

Overview
NameDR908549
Unique NameDR908549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908549_ssr98 microsatellite DR908549_ssr98:98..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig960 contig Csv1_Contig960:1..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908549 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.498e-12
Identity = 38/86 (44.19%), Postives = 43/86 (50.00%), Query Frame = 2 
Query:  179 TCPIDTLKLGACVDVXXXXXXXXXXSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPRFQCPA 433
            TCPID LKLGACVDV           SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+CP+
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
The following BLAST results are available for this feature:
BLAST of DR908549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC2.498e-1244.1936.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16677 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908549 ID=DR908549; Name=DR908549; organism=Citrus sinensis; type=EST; length=474bp
ATATACCCCAAGCCCTACCCCACCATATGTACCATCACCACCGTATACCC
CAAGCCCACCATATGTACCATCACCACCGTATACCCCAAGCCCTAGCCCA
CCACCACCACCAAGTGGAACACCGTGTCCTCCGCCGCCGCCACCAAAGGT
GAGACCGTACCCTCCACCACCATCACAAACTTGTCCCATTGATACTCTCA
AGCTTGGTGCATGCGTCGACGTGTTGGGCGGTCTAATACACATCGGTATA
GGCAGCAGTGCAAAGGACGCTTGCTGCCCCGTGCTGCAGGGGCTACTGGA
CTTGGATGCTGCATTATGTCTTTGCACCACCATTAAACTTAAGCTTTTGA
ATATCAATCTTATTATACCGATCGCCCTTGAAGTGCTTATTGACTGCGGC
AAGCATCCGCCGCCCCGATTCCAGTGTCCTGCCTAATTGGTGACGCTTTC
CAGCCATGCAATTGATGAATGCGA
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