DR908544

Overview
NameDR908544
Unique NameDR908544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6364 contig Csv1_Contig6364:1..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908544 vs. ExPASy Swiss-Prot
Match: GAT26_ARATH (GATA transcription factor 26 OS=Arabidopsis thaliana GN=TIFY1 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.233e-51
Identity = 105/193 (54.40%), Postives = 128/193 (66.32%), Query Frame = 3
Query:    9 PQGMEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEG--------EVNDSDCGTAAHTDNELVSFSNDDDSALISEH 560
            PQ ME+        + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM RNKGQFTS+K ++G A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LCNACGLFWAN+G LRDL KK E+  L   +  +G         +N        HT   +VS +N D+S L+ +H
Sbjct:  120 PQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDG-AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAANNLNTEAASVEEHT--SMVSLANGDNSNLLGDH 309          
BLAST of DR908544 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.308e-38
Identity = 82/140 (58.57%), Postives = 96/140 (68.57%), Query Frame = 3
Query:   30 PHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKSEGGALG----WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 419
            PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK +   A      W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACGL WANKGA RDL K
Sbjct:  126 PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265          
BLAST of DR908544 vs. ExPASy Swiss-Prot
Match: GAT27_ARATH (GATA transcription factor 27 OS=Arabidopsis thaliana GN=TIFY2B PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.405e-37
Identity = 82/140 (58.57%), Postives = 95/140 (67.86%), Query Frame = 3
Query:   30 PHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKS--EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 419
            PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK S  + G+ G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANKG LRDL K
Sbjct:  122 PHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261          
The following BLAST results are available for this feature:
BLAST of DR908544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAT26_ARATH2.233e-5154.40GATA transcription factor 26 OS=Arabidopsis thalia... [more]
GAT25_ARATH6.308e-3858.57GATA transcription factor 25 OS=Arabidopsis thalia... [more]
GAT27_ARATH1.405e-3758.57GATA transcription factor 27 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16672 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908544 ID=DR908544; Name=DR908544; organism=Citrus sinensis; type=EST; length=619bp
CTTCCAGTCCACAGGGCATGGAAGTAATTCCTCACAGCCAGAGGGGTATT
GCGGACTATCCTGCTAAATGTACCCAACCACAAAGAGCAGCTTCATTAGA
TAGGTTTCGGCAGAAGAGGAAAGAGCGTTGCTTTGATAAGAAAGTTAGAT
ACAGTGTCCGGCAAGAGGTTGCTCTCAGGATGCAGCGGAACAAAGGCCAA
TTTACTTCAGCCAAGAAGTCTGAAGGGGGAGCTCTTGGTTGGAGTAATGC
CCAGGATCCAGGACAAGACGACAGCCCATCAGAAACCTCGTGTACACATT
GTGGCATTAGTTCGAAGTCAACCCCAATGATGCGACGTGGTCCTTCTGGG
CCAAGATCCCTCTGTAATGCCTGTGGTCTTTTTTGGGCAAACAAGGGTGC
TTTAAGGGATCTCGGAAAGAAAATGGAGGACCAACCTCTTACTCCAGCTG
AGCAGGGTGAAGGTGAAGTGAATGACTCGGACTGTGGAACTGCCGCTCAT
ACAGACAACGAATTAGTTTCTTTCTCGAATGATGATGATTCAGCTTTAAT
ATCCGAGCACTAAGTCCTTTCTTCCTATATGGGTTAGAGTGGTCCAGCTA
CCATCATTCAAGTATAAGG
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