DR908543

Overview
NameDR908543
Unique NameDR908543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 5.899e-76
Identity = 132/167 (79.04%), Postives = 152/167 (91.02%), Query Frame = 2
Query:   32 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            SR  +PL V RV+G+VVD+F PSVK+NVIYN +KQV NGHELMPAVI AKPRV+IGGEDMRSAYTLIMTDPD P PSDP LREHLHW+VTDIPG+TD+SFG+EIVSYE+PKPV+GIHRYV +L+KQ GRQTV+P A+RDHFNTR+++AENGLG PVAAVYFNAQRET
Sbjct:    3 SRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSGRQTVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRET 169          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.966e-64
Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 2
Query:   29 MSRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVR-PPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            MSR  +PL VGRV+GDV++ F PSV M V +NSN  V+NGHEL P+++++KPRV+IGG+D+RS +TLIM DPDAPSPS+P +RE+LHWMVTDIPGTTDASFG+EIV YETPKPV GIHRYVF LFKQRGRQ V+  P +R+ FNT  FS+  GL  PVAAVYFNAQRET
Sbjct:    1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRET 169          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.385e-63
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 2
Query:   32 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTV-RPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            S+ +DPL +GRV+G+VVD F PSVKM+V YNS+K V NGHEL P+ + +KPRV++ G D+RS +T+IM DPD P PSDP LREHLHW+VTDIPGTTD SFGKEIV YE P+P +GIHR+VF+LFKQ+ RQTV   P SRD FNTR+F+ EN LG PVAAV+FN QRET
Sbjct:    3 SKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRET 170          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.666e-62
Identity = 112/168 (66.67%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   32 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQT-VRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            S+ +DPL +GRV+G+VVD F PSVKM+V YNS+K V NGHEL P+ + +KPRV++ G D+RS +TLIM DPD P PSDP LREHLHW+VTDIPGTTD SFG+EIV YE P+P +GIHR+VF+LFKQ+ RQT +  P SRD FNTR+FS EN LG PVAA +FN QRET
Sbjct:    3 SKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRET 170          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.080e-61
Identity = 108/168 (64.29%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   32 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTV-RPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            S+  +PL +GRV+G+VVD F PSVKM+V+YN+NK V NGHE  P+ + +KPRV++ G D+RS +TLIM DPD P PSDP LREHLHW+VTDIPGTTD SFG+E+V YE P+P +GIHR+VF+LFKQ+ RQT+   P SRD F++R+FS EN LG PVAAV+FN QRET
Sbjct:    3 SKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRET 170          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.406e-61
Identity = 110/166 (66.27%), Postives = 134/166 (80.72%), Query Frame = 2
Query:   38 TTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGR-QTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            ++DPL VGRV+GDVVD  + +VKM V YNS+KQV NGHEL P+V+  KP+V++ G DMRS +TL+MTDPD P PSDP LREHLHW+VTDIPGTTD SFGKEI+ YE P+P +GIHR+V++LFKQ  R   V  P+ RD FNTR+F+ EN LGLPVAAV+FN QRET
Sbjct:    5 SSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRET 170          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 4.104e-61
Identity = 114/171 (66.67%), Postives = 138/171 (80.70%), Query Frame = 2
Query:   38 TTDPLAVGRVVGDVVDTFIPSVKMNVIYNSN---KQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQ--RGRQTVRPP-ASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            ++DPL +GRV+GDVVD F  +VKM+VIYNSN   K V NGHEL P+ + + PRV++ G DMRS +TLIMTDPD P PSDP LREHLHW+VTDIPGTTD+SFGKE+VSYE P+P +GIHR+VF+LFKQ  RG+  + PP   RD FNTR+F+ EN LGLPVAAV+FN QRET
Sbjct:    6 SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRET 176          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.037e-60
Identity = 109/168 (64.88%), Postives = 138/168 (82.14%), Query Frame = 2
Query:   32 SRTTDPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPP-ASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            +R  +PL +GRVVGDV+D F P+ KMNV YN  KQV+NGHEL P+ + +KPRV+I G D+RS +TL+M DPD P PSDP L+EHLHW+VT+IPGTTDA+FGKE+VSYE P+P +GIHR+VF+LF+Q+ R+ + P   SRDHFNTR+F+ E  LGLPVAAV+FNAQRET
Sbjct:    6 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNK-KQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRET 172          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 98/163 (60.12%), Postives = 121/163 (74.23%), Query Frame = 2
Query:   44 DPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRET 532
            DPL V RVVGDV+D F  S+ + V Y   ++V NG +L P+ +  KPRV+IGGED+R+ YTL+M DPD PSPS+P LRE+LHW+VTDIP TT  +FG EIV YE P P  GIHR VFILF+Q GRQTV  P  R +FNTR+F+    LGLPVAAV++N QRE+
Sbjct:    7 DPLIVSRVVGDVLDPFNRSITLKVTYGQ-REVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRES 168          
BLAST of DR908543 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 93/162 (57.41%), Postives = 117/162 (72.22%), Query Frame = 2
Query:   44 DPLAVGRVVGDVVDTFIPSVKMNVIYNSNKQVANGHELMPAVIIAKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDASFGKEIVSYETPKPVVGIHRYVFILFKQRGRQTVRPPASRDHFNTRQFSAENGLGLPVAAVYFNAQRE 529
            DPL VG VVGDV+D F   V + V Y  +++V NG +L P+ ++ KP V+IGG+D R+ YTL+M DPD PSPS+P  RE+LHW+VTDIP TT  +FG E+V YE+P+P  GIHR V +LF+Q GRQTV  P  R  FNTR+F+    LGLPVAA YFN QRE
Sbjct:    7 DPLVVGSVVGDVLDPFTRLVSLKVTYG-HREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQLGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRE 167          
The following BLAST results are available for this feature:
BLAST of DR908543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CET1_TOBAC5.899e-7679.04CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
BFT_ARATH3.966e-6469.82Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
CET2_TOBAC4.385e-6367.26CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
CET4_TOBAC1.666e-6266.67CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
SELFP_SOLLC1.080e-6164.29Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
CEN_ARATH2.406e-6166.27Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]
CEN_ANTMA4.104e-6166.67Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN... [more]
TFL1_ARATH2.037e-6064.88Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
FT_ARATH1.323e-5160.12Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]
TSF_ARATH1.369e-4857.41Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16671 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908543 ID=DR908543; Name=DR908543; organism=Citrus sinensis; type=EST; length=619bp
AGCTTCCATTATTCTCAGCTTACTAAAAATGTCAAGAACGACTGATCCAC
TAGCTGTTGGACGCGTGGTGGGAGATGTGGTGGATACTTTTATTCCTAGT
GTGAAGATGAACGTGATTTATAACTCTAATAAGCAAGTTGCTAATGGCCA
CGAGCTTATGCCTGCTGTCATTATTGCTAAGCCTAGAGTCGATATTGGCG
GCGAGGACATGAGATCAGCTTATACCTTGATTATGACAGACCCTGATGCT
CCAAGCCCTAGTGATCCATGCTTAAGAGAACATCTCCACTGGATGGTGAC
AGACATTCCTGGAACCACTGACGCTTCTTTTGGAAAAGAAATCGTGAGCT
ATGAGACACCAAAACCGGTGGTGGGCATCCACAGATACGTGTTCATATTG
TTTAAGCAGAGAGGCAGGCAAACAGTGAGGCCACCTGCTTCAAGGGACCA
CTTCAACACAAGGCAATTCTCAGCAGAGAATGGCTTAGGCCTCCCTGTTG
CTGCCGTTTACTTCAATGCCCAAAGAGAAACAGCTGCCAGAAGACGATGA
TGATCATTGATTGATTCGTAGAGAAACTTGACGTTGCCTCATGATCGATC
CATTACCAATAAATTTATT
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