DR908530

Overview
NameDR908530
Unique NameDR908530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3957 contig Csv1_Contig3957:1802..2422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_RICCO (Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 7.144e-106
Identity = 177/205 (86.34%), Postives = 196/205 (95.61%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            L+A GI+EDPRNYLTFFCLGNREVK+SGEYEPAE+PE D+D++RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMG YQP+HLSTR PARGQIHGFRMSLWYEHLGMLD++FL PES ECV+KVNQ+AE+YWDLYSSE+LEHDLPGHLLRYPIGV+ EGDVTELPGTEFFPDTKARVLG KSDY+PP+LTT
Sbjct:  604 LKANGIIEDPRNYLTFFCLGNREVKKSGEYEPAEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHLSTRQPARGQIHGFRMSLWYEHLGMLDESFLNPESEECVRKVNQMAEKYWDLYSSETLEHDLPGHLLRYPIGVASEGDVTELPGTEFFPDTKARVLGAKSDYLPPILTT 808          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_ARATH (Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 7.393e-103
Identity = 170/205 (82.93%), Postives = 193/205 (94.15%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            LRA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAE+P+ D+D++RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQIHGFRMSLWYEHLGMLD+TFL P S EC++KVN+I+++YWD YSSESLEHDLPGHLLRYPIGV+ EGD+TELPG EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct:  606 LRAQGLEEDPRNYLTFFCLGNREVKKDGEYEPAEKPDPDTDYMRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQIHGFRMSLWYEHLGMLDETFLDPSSLECIEKVNRISDKYWDFYSSESLEHDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGTKSDYLPPILTT 810          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_BRAOC (Phospholipase D alpha 1 OS=Brassica oleracea var. capitata GN=PLD1 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 3.669e-102
Identity = 170/205 (82.93%), Postives = 191/205 (93.17%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            LRA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAERP+ DS +++AQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQIHGFRMSLWYEHLGMLD+TFL P S EC++KVN+I+++YWDLYSSESLEHDLPGHLLRYP+ V GEGDVTE PG EFFPDTKAR+LGTKSDY+PP+LTT
Sbjct:  606 LRAQGLEEDPRNYLTFFCLGNREVKKEGEYEPAERPDADSSYMKAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQIHGFRMSLWYEHLGMLDETFLDPSSVECIEKVNRISDKYWDLYSSESLEHDLPGHLLRYPVDVDGEGDVTEFPGFEFFPDTKARILGTKSDYLPPILTT 810          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_TOBAC (Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2)

HSP 1 Score: 369.777 bits (948), Expect = 6.259e-102
Identity = 171/205 (83.41%), Postives = 191/205 (93.17%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            L AKGI EDPRNYLTFFC+GNREVK+SG YEP+E PE DSD++RAQEARRFMIYVH+KMMIVDDEYII+GSANINQRSM+GARD+EIAMG YQP+HL+TR PARGQIHGFRM+LWYEHLGMLD+TFL PES ECV KVN++A++YWDLYSSESLE DLPGHLLRYPIGV+ EGDVTELPG E FPDTKARVLGTKSDY+PP+LTT
Sbjct:  604 LNAKGIEEDPRNYLTFFCIGNREVKKSGAYEPSETPEPDSDYIRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPHHLATREPARGQIHGFRMALWYEHLGMLDETFLHPESEECVSKVNRMADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGAEHFPDTKARVLGTKSDYLPPILTT 808          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA2_ARATH (Phospholipase D alpha 2 OS=Arabidopsis thaliana GN=PLDALPHA2 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.068e-101
Identity = 169/206 (82.04%), Postives = 192/206 (93.20%), Query Frame = 3
Query:    3 LRAKGIM-EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            LR  G+  EDPR+YLTFFCLGNREVK+ GEYEP+E+PE D+D++RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHLSTR PARGQIHGFRMSLWYEHLGMLD+TFL P S EC++KVN++A++YWDLYSSESLEHDLPGHLLRYPIG++ EG++TELPG EFFPDTKAR+LG KSDYMPP+LTT
Sbjct:  605 LRENGLEGEDPRDYLTFFCLGNREVKKDGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMSLWYEHLGMLDETFLDPSSQECIQKVNRVADKYWDLYSSESLEHDLPGHLLRYPIGIASEGNITELPGCEFFPDTKARILGVKSDYMPPILTT 810          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_VIGUN (Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 4.057e-101
Identity = 171/205 (83.41%), Postives = 189/205 (92.20%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            LRAKG  EDPRNYLTFFCLGNREVK+SGEYEPAE+PE DSD+ RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+   PARGQ++GFRMSLWYEHLGML DTF +PES EC+ KVNQIA++YWDLYSSESLE DLPGHLLRYPIGV+ EG+VTELPG EFFPDTKAR+LG K+DY+PP+LTT
Sbjct:  605 LRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPAEQPEPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLANTQPARGQVYGFRMSLWYEHLGMLHDTFQRPESEECINKVNQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGEVTELPGFEFFPDTKARILGAKADYLPPILTT 809          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA2_BRAOC (Phospholipase D alpha 2 OS=Brassica oleracea var. capitata GN=PLD2 PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 2.629e-100
Identity = 165/205 (80.49%), Postives = 190/205 (92.68%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            LRA+G+ EDPRNYLTFFCLGNREVK+ GEYEPAERP+ D+D++RAQEARRFMIYVH+KMMIVDDEYII+GSANINQRSM+GARD+EIAMGGYQP+HLS R PARGQ+HGFRMSLWYEHLGMLD+TFL P S EC++KVN+IA++YWD YSSESLEHDLPGHLLRYPI V  EG++TELPG EFFPD+KAR+LG K DY+PP+LTT
Sbjct:  608 LRAQGLEEDPRNYLTFFCLGNREVKKEGEYEPAERPDPDTDYMRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPHHLSHRQPARGQVHGFRMSLWYEHLGMLDETFLDPSSLECIEKVNRIADKYWDFYSSESLEHDLPGHLLRYPISVDNEGNITELPGFEFFPDSKARILGNKVDYLPPILTT 812          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_PIMBR (Phospholipase D alpha 1 OS=Pimpinella brachycarpa GN=PLD1 PE=2 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 6.477e-99
Identity = 166/205 (80.98%), Postives = 190/205 (92.68%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            L+A GI EDPRNYLTFFCLGNREVKR GEYEP+E+P+ D+D+ RAQE+RRFMIYVHAKMMIVDDEYIIIGSANINQRSM+GA+D+EIAMG YQP+HL+TR PARGQIHGFRMSLWYEHLGMLDDT   PES +CV+KVN +A++YWDLYSSE+LE+DLPGHLLRYPI V+ EG+VTELPGTEFFPDTKARVLG KSD++PP+LTT
Sbjct:  604 LQANGIEEDPRNYLTFFCLGNREVKRDGEYEPSEKPDPDTDYSRAQESRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGAKDSEIAMGAYQPHHLATREPARGQIHGFRMSLWYEHLGMLDDTLALPESVDCVQKVNTVADKYWDLYSSETLENDLPGHLLRYPIAVASEGNVTELPGTEFFPDTKARVLGAKSDFLPPILTT 808          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_ORYSJ (Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 5.132e-96
Identity = 161/205 (78.54%), Postives = 188/205 (91.71%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            L+AKGI  +P++YLTFFCLGNREVK++GEY+P E+PE D+D+ RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMGGYQPYHL+TR PARGQIHGFRM+LWYEHLGMLDD F +PES ECV+KVN+IAE+YWD+YSS+ L+ DLPGHLL YPIGV+ +G VTELPG E+FPDT+ARVLG KSDYMPP+LT+
Sbjct:  608 LQAKGIEANPKDYLTFFCLGNREVKQAGEYQPEEQPEADTDYSRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLATRQPARGQIHGFRMALWYEHLGMLDDVFQRPESLECVQKVNRIAEKYWDMYSSDDLQQDLPGHLLSYPIGVASDGVVTELPGMEYFPDTRARVLGAKSDYMPPILTS 812          
BLAST of DR908530 vs. ExPASy Swiss-Prot
Match: PLDA1_MAIZE (Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.493e-95
Identity = 161/205 (78.54%), Postives = 183/205 (89.27%), Query Frame = 3
Query:    3 LRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDFLRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMEGARDTEIAMGGYQPYHLSTRVPARGQIHGFRMSLWYEHLGMLDDTFLQPESSECVKKVNQIAERYWDLYSSESLEHDLPGHLLRYPIGVSGEGDVTELPGTEFFPDTKARVLGTKSDYMPPVLTT 617
            L A GI  +P++YLTFFCLGNREVK+ GEYEP E PE D+D++RAQEARRFMIYVH KMMIVDDEYIIIGSANINQRSM+GARD+EIAMG YQPYHL+TR PARGQIHGFRMSLWYEHLGML+D F +PES ECV+KVN++AE+YWDLYSS+ LE DLPGHLL YPIGV+ +G VTELPG E FPDT+ARVLG KSDY+PP+LTT
Sbjct:  608 LEANGIEANPKDYLTFFCLGNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT 812          
The following BLAST results are available for this feature:
BLAST of DR908530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PLDA1_RICCO7.144e-10686.34Phospholipase D alpha 1 OS=Ricinus communis GN=PLD... [more]
PLDA1_ARATH7.393e-10382.93Phospholipase D alpha 1 OS=Arabidopsis thaliana GN... [more]
PLDA1_BRAOC3.669e-10282.93Phospholipase D alpha 1 OS=Brassica oleracea var. ... [more]
PLDA1_TOBAC6.259e-10283.41Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PL... [more]
PLDA2_ARATH1.068e-10182.04Phospholipase D alpha 2 OS=Arabidopsis thaliana GN... [more]
PLDA1_VIGUN4.057e-10183.41Phospholipase D alpha 1 OS=Vigna unguiculata GN=PL... [more]
PLDA2_BRAOC2.629e-10080.49Phospholipase D alpha 2 OS=Brassica oleracea var. ... [more]
PLDA1_PIMBR6.477e-9980.98Phospholipase D alpha 1 OS=Pimpinella brachycarpa ... [more]
PLDA1_ORYSJ5.132e-9678.54Phospholipase D alpha 1 OS=Oryza sativa subsp. jap... [more]
PLDA1_MAIZE1.493e-9578.54Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16658 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908530 ID=DR908530; Name=DR908530; organism=Citrus sinensis; type=EST; length=621bp
CTCTTAGAGCAAAGGGCATTATGGAAGATCCCAGGAACTATTTGACATTC
TTCTGCCTTGGGAATCGGGAGGTGAAGAGGAGTGGTGAATATGAACCTGC
AGAAAGGCCAGAGGATGATTCAGACTTTCTTAGAGCTCAGGAAGCTCGAC
GCTTCATGATCTACGTTCATGCCAAGATGATGATTGTTGATGACGAATAC
ATTATAATTGGATCTGCCAACATCAACCAGCGATCAATGGAGGGTGCTAG
GGACACTGAGATAGCCATGGGAGGCTACCAACCATATCATTTGTCAACCA
GGGTGCCAGCACGAGGCCAGATACACGGCTTCCGTATGTCACTATGGTAC
GAGCACCTAGGCATGCTCGATGACACCTTCCTCCAGCCAGAAAGTAGCGA
ATGTGTTAAGAAGGTTAACCAGATTGCCGAACGGTATTGGGACCTGTACT
CCAGTGAGTCTCTTGAGCATGACTTGCCCGGTCACTTGCTCCGCTACCCT
ATTGGTGTTTCTGGTGAAGGAGATGTCACGGAGTTGCCAGGAACTGAGTT
CTTCCCCGACACCAAGGCTCGTGTTCTCGGTACCAAATCAGATTATATGC
CCCCAGTCCTGACCACCTGAT
back to top