DR908527

Overview
NameDR908527
Unique NameDR908527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1478 contig Csv1_Contig1478:107..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit Tim9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.534e-39
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 2
Query:   53 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 331
            MD +M+AGLDGLPE+DKA+MA+MID LQLR+SLRMYNSLVERCF DCVD+FTRK+LQKQEETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct:    1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 2
Query:   53 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 331
            MDK+ML  LDGLPE+DK RMAAM+D LQ+R+SLRMYNSLVERCF DCVD F RKTL KQEE+CV RCAEKFLKHSMRVGMRFAELN   AT +
Sbjct:    1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 2
Query:   53 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 331
            MDKNML  LD LPE+DK +MA+MI+ LQ+R+SLRMYN+LVERCF DCVD+F RKTL KQEETCV RCAEKFLKHSMRVG+RFAELN  AAT +
Sbjct:    1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++   + +I+H Q+++ +R+Y++LVERCF DCV++FT   L  +E+TC+ RC+EKFLKHS RVG+RF E N+
Sbjct:    1 MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii GN=TIM9 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 37/79 (46.84%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++     +++  Q+++ +R+Y++LVERCF+DCV++FT   L  +E+TC+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae GN=TIM9 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++     +++  Q+++ +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+EKFLKHS RVG RF E N+
Sbjct:    1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica GN=TIM9 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.270e-17
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++     +++  Q+++ +R+Y+SLV+RCF DCV++FT K L  +EE+C+ +C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis GN=TIM9 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.070e-16
Identity = 36/79 (45.57%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++     +++  Q+++ +R+Y++LVERCF+DCV++FT   L  +E+ C+MRC+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata GN=TIM9 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 35/79 (44.30%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   77 LDGLPEQDKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 313
            +D L  +++     +++  Q+++ +R+Y+ LVERCF DCV++FT   L  +EE+C+++C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DR908527 vs. ExPASy Swiss-Prot
Match: TIM9_CRYNE (Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans GN=TIM9 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 2
Query:   98 DKARMAAMIDHLQLRNSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 316
            ++A M+ +I+  Q+++ +R+Y+ LVE+CFN C  +FT K L   E TCV  C +KFLKHS RVG RFAE N++
Sbjct:   10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHSERVGARFAEHNAE 82          
The following BLAST results are available for this feature:
BLAST of DR908527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_ARATH1.534e-3982.80Mitochondrial import inner membrane translocase su... [more]
TIM9_ORYSJ9.305e-3778.49Mitochondrial import inner membrane translocase su... [more]
TIM9_MESCR6.031e-3676.34Mitochondrial import inner membrane translocase su... [more]
TIM9_ZYGBA1.492e-1848.10Mitochondrial import inner membrane translocase su... [more]
TIM9_ASHGO7.407e-1846.84Mitochondrial import inner membrane translocase su... [more]
TIM9_YEAST2.155e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_YARLI6.270e-1745.57Mitochondrial import inner membrane translocase su... [more]
TIM9_KLULA1.070e-1645.57Mitochondrial import inner membrane translocase su... [more]
TIM9_CANGA1.397e-1644.30Mitochondrial import inner membrane translocase su... [more]
TIM9_CRYNE1.183e-1549.32Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16655 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-38_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908527 ID=DR908527; Name=DR908527; organism=Citrus sinensis; type=EST; length=622bp
TCGGCACGAGGGTTCTCAGTTCAACAACATTCAACACAGAAAAGGAGCCG
GAATGGACAAGAACATGTTGGCTGGACTTGACGGTCTTCCCGAACAGGAC
AAGGCCAGAATGGCTGCCATGATCGACCATCTTCAATTACGGAACAGTTT
GAGGATGTACAACTCCCTTGTGGAGAGATGTTTCAACGATTGTGTGGACA
ACTTTACACGCAAGACCCTACAGAAGCAAGAGGAGACCTGCGTCATGCGT
TGTGCTGAGAAATTTCTGAAGCACTCAATGCGCGTTGGTATGAGGTTTGC
AGAACTCAATTCACAAGCAGCTACACAAGAATAGTATCCCCAGACGACCA
TTAACGGCGCCAAGAAACCATTTGGTTTATTCCTGTAGAATTTCTTTTGG
ATCAAATTAGTGGCTATTAATTTTCTGCTTTTGCCATCAGTGGAAGCCCA
AGTTTGCGGTAGGATTCATAATCATCGTCTGAAAAATCATTTTTACACAT
TTTATCATGGCTTCACATATTGAATAATTGAATCAAATATAACGGAATTC
CATCTTAGAATGTAAATGAAATTGAGTCAAGTGCAGCAGCGGCCAAAGAT
GCGCTAACCTCGGTCAAATTCA
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