DR908524

Overview
NameDR908524
Unique NameDR908524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 82/165 (49.70%), Postives = 107/165 (64.85%), Query Frame = 2
Query:   83 PS*CKLEKML*ENVPGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESV--AGTECAKVK 571
            P+   + K + +   GVPLA +T+G LL +   E+ W H RD+E+  +PQ+ES ILP L+LSY HLP  L+QCFAYCA+FPKD  ++KE L+ LWMA GFL LS  N   EDVG+E +  L  RSFFQ+ E    GN    KIHDL+HDLA S+  A   C  ++
Sbjct:  335 PNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEAKS-GNTY-FKIHDLIHDLATSLFSASASCGNIR 496          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.659e-33
Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 2
Query:   50 WHLNKDR-----NQKIPS*CKLEKML*ENVPGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESV 544
            W L K R      +  P   ++ K + +   GVPLA +T+G LL +   E+ W H RD E+  +PQ+E+ +LP L+LSY HLP  L+QCFAYCA+FPKD  I KE L+ LWMA  FL LS  N   EDVG+E +  L  RSFFQ+ E          K+HDL+HDLA S+
Sbjct:  317 WLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFL-LSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF--KMHDLIHDLATSM 483          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  128 GVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESV--AGTECAKVK 571
            GVPLA +T+G +L +   E  W H RD  +  +PQ+ES ILP L+LSY  LP  LKQCFAYCA+FPKD  + KE+L+ LWMA GFL LS  N   EDVG E +  L  RSFFQ+ E  +       K+HDL+HDLA S+  A T  + ++
Sbjct:  349 GVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFL-LSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF--KMHDLIHDLATSLFSANTSSSNIR 495          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 75/165 (45.45%), Postives = 101/165 (61.21%), Query Frame = 2
Query:   83 PS*CKLEKML*ENVPGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESV--AGTECAKVK 571
            P+   + K + +   GVPLA +T+G +L +   E  W H RD  +  +PQ+ES ILP L+LSY HLP  L+QCF YCA+FPKD  + KE L+  WMA GFL LS  N   EDVG+E +  L  RSFFQ+ E +        K+HDL+HDLA S+  A T  + ++
Sbjct:  333 PNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFL-LSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF--KMHDLIHDLATSLFSANTSSSNIR 494          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.305e-24
Identity = 54/146 (36.99%), Postives = 92/146 (63.01%), Query Frame = 2
Query:  128 GVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAK 565
            G+PLA++T+G +L +      W       +  +P ++S++LP L++SY +LP+ LK+CFAYC++FPK +   K+++VLLWMA+GFL  +  ++  E++G+EYF  L SRS  Q  +        R  +HD +++LA+  +G   +K
Sbjct:  372 GLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK-------TRYIMHDFINELAQFASGEFSSK 510          

HSP 2 Score: 21.557 bits (44), Expect = 5.305e-24
Identity = 10/40 (25.00%), Postives = 19/40 (47.50%), Query Frame = 1
Query:    4 LRGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKC 123
            L+ L +   WSLF +  F       + ++  + + +V KC
Sbjct:  331 LQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKC 370          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  104 KML*ENVPGVPLAIRTIGRLLYYNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLD 577
            K + E   G+PLA R I   L        W     +  S      + ILP LKLSYD LP  LK+CFA C++FPK ++  +E+LVLLWMA   L     ++  ED+G++Y   L+++SFFQ  +      +    +HDLM+DLA++V+G  C +++ D
Sbjct:  360 KRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYT----NSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDI----TMTSFVMHDLMNDLAKAVSGDFCFRLEDD 509          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: DRL3_ARATH (Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 2
Query:   98 LEKML*ENVPGVPLAIRTIGRLLYYNNTETYW---LHFRDDELSKVPQEESDILPKLKLSYDHLPSP-LKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVA 547
            L + + E   G+PLA+  IG+ +    T   W   +H  +    + P  E  ILP LK SYD L    +K CF YC+LFP+DY + KE+L+  WM +GF+  + D     + GH+   SL+      D E        + K+HD++ ++A  +A
Sbjct:  407 LARKVAEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHLLMDGEL-----TTKVKMHDVIREMALWIA 555          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.070e-16
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  128 GVPLAIRTIGRLLY-----YNNTETYWLHFRDDELSKVPQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVA 547
            G+PL I+ +G LL      Y+       HF+D EL     E  +++  L+LSYD LPS LK C    +L+P+D +I K+QLV  W+ +GF+ +  + +   + G + F  L +R   +  +    G II CKIHD++ DL   +A
Sbjct:  357 GLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQD-ELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFV-MWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIA 499          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 50/157 (31.85%), Postives = 85/157 (54.14%), Query Frame = 2
Query:   98 LEKML*ENVPGVPLAIRTIGRLLYYNNTETYWLHFRDD---ELSKVPQEESDILPKLK-LSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTE 556
            + + L E   G+PLAI ++G ++     E+ W         EL+     E  I+  +  LS++ LP PLK+CF YC+LFP +Y + +++L+ +WMAQ F+   I     E+V   Y   L+ R+  Q   ++ +G     K+HD++ ++A SV+  E
Sbjct:  365 IARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNN--NHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVE-PIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLE 518          
BLAST of DR908524 vs. ExPASy Swiss-Prot
Match: RP8L2_ARATH (Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.639e-13
Identity = 45/150 (30.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:  128 GVPLAIRTIGRLLYYNNTETYWLHFRDDELSKV-------PQEESDILPKLKLSYDHLPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQGFLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTE 556
            G+PLA++ +G LL   +T   W     + ++ +           + +   L LSY+ LP  LK CF Y A FP+DY I  + L   W+A+G +    D    +D G  Y   L+ R+     E      I  C++HD+M ++  S A  E
Sbjct:  357 GLPLAVKVLGGLLAKKHTVLEWKRVHSNIVTHIVGKSGLSDDNSNSVYRVLSLSYEDLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELVRRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEE 506          

HSP 2 Score: 21.9422 bits (45), Expect = 1.639e-13
Identity = 11/39 (28.21%), Postives = 19/39 (48.72%), Query Frame = 1
Query:    7 RGLPEDMSWSLFTRMAFEQGSEPKDSKLVQIGKDVVGKC 123
            R L  + SW LF R+   +  + +      +GK++V  C
Sbjct:  317 RILTPEQSWKLFERIVSSRRDKTEFKVDEAMGKEMVTYC 355          
The following BLAST results are available for this feature:
BLAST of DR908524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RGA4_SOLBU2.993e-3549.70Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU3.659e-3346.47Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA2_SOLBU4.045e-3250.00Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA1_SOLBU4.045e-3245.45Putative disease resistance protein RGA1 OS=Solanu... [more]
R13L1_ARATH5.305e-2436.99Putative disease resistance RPP13-like protein 1 O... [more]
DRL21_ARATH1.221e-2037.97Putative disease resistance protein At3g14460 OS=A... [more]
DRL3_ARATH2.155e-1733.12Probable disease resistance protein At1g15890 OS=A... [more]
R13L4_ARATH1.070e-1635.17Disease resistance RPP13-like protein 4 OS=Arabido... [more]
RPM1_ARATH6.489e-1431.85Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
RP8L2_ARATH1.639e-1330.00Probable disease resistance RPP8-like protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16652 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908524 ID=DR908524; Name=DR908524; organism=Citrus sinensis; type=EST; length=622bp
GCTCTCAGAGGCCTCCCTGAAGACATGTCCTGGTCTTTGTTTACGCGAAT
GGCATTTGAACAAGGATCGGAACCAAAAGATTCCAAGTTAGTGCAAATTG
GAAAAGATGTTGTAGGAAAATGTGCCTGGAGTTCCTCTTGCCATAAGGAC
GATCGGACGCTTACTTTACTATAACAATACAGAAACTTACTGGCTGCACT
TCAGGGATGATGAGCTGTCAAAAGTTCCTCAGGAAGAAAGTGATATTTTA
CCAAAACTCAAACTCAGTTATGATCATCTGCCATCACCATTGAAACAGTG
CTTTGCTTACTGTGCATTGTTTCCCAAAGATTATCTAATAGTGAAGGAGC
AACTGGTTTTACTTTGGATGGCACAAGGGTTTCTTGGGCTATCAATCGAC
AACCAATGTCCAGAAGATGTTGGTCATGAGTATTTTATGAGTTTGCTTTC
GAGGTCATTTTTTCAAGATGCAGAATATGATGAATGGGGAAATATAATCA
GATGCAAGATTCATGATCTCATGCATGATCTAGCAGAGTCAGTTGCTGGA
ACTGAGTGTGCCAAGGTGAAACTGGATGCAAGAATGTTAATGAAAGGACT
CATCACATTTCATGTGTTTCTG
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