DR908509

Overview
NameDR908509
Unique NameDR908509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3394 contig Csv1_Contig3394:211..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.812e-40
Identity = 84/155 (54.19%), Postives = 113/155 (72.90%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 470
            Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K+  + +KLQDF +F +  P  S   ++ADLR RV+     FP+PG
Sbjct:  350 YSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKR--KTAKLQDFKSFLLKDPETS--QHLADLRRRVQQFARAFPMPG 500          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.036e-40
Identity = 82/154 (53.25%), Postives = 110/154 (71.43%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 470
            Y  +V+ N RA+A  L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+R F E +F  + DFI EGV I LE K   + +KLQDF +F+   +      +A+LR RVE     FP+PG
Sbjct:  350 YSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKS--KTAKLQDFKSFLLKDS-ETSQRLANLRQRVEQFARAFPMPG 500          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.036e-40
Identity = 83/155 (53.55%), Postives = 113/155 (72.90%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNF-VTSPNFSLMNNVADLRGRVEALTTQFPIPG 470
            Y  +++ N +A+A+ L+E GY LVSGG+DNHLVLVDLRP G+DGAR E++L++ SIT NKN+ PGD+SA+ PGG+R+G+PA+T+RGF E +F  +  FI EGV I LE K   + +KLQDF +F +  P  S  + +ADLR RVE     FP+PG
Sbjct:  350 YSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKS--KTTKLQDFKSFLLKDPETS--HQLADLRQRVEQFARAFPMPG 500          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.991e-40
Identity = 80/156 (51.28%), Postives = 113/156 (72.44%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 470
            K YQ +V+SN    A  L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+   I  NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F  +A++  + V I L+ K   QG+KL+DF++ + S + ++ + +A LR  VE    QFP  G
Sbjct:  353 KAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.612e-39
Identity = 79/158 (50.00%), Postives = 111/158 (70.25%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 473
            KVYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   +    +     V  LR +VE+  + FP+PG+
Sbjct:  325 KVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKY--QGAVQALREKVESFASLFPLPGL 480          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.612e-39
Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 3
Query:    9 YQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 470
            Y  +V+ N + LA R+ + GY L +GG+DNHL+LVDLRP+G++GAR E +LD+A I  NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F  + DFIHEGV+I   AKK     G  L+DF +F T  N     +VADL  RVE  +T+F IPG
Sbjct:  352 YGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKSF-TETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.298e-38
Identity = 79/158 (50.00%), Postives = 110/158 (69.62%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 473
            KVYQ++VV+NCRAL+  L ELGYK+V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PGD+SAL P G+R+G+PA+T+RG  EK+F  +A FIH G+E+TL+ +      + L++F   +    +     V  LR  VE+  + FP+PG+
Sbjct:  325 KVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 480          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.298e-38
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 473
            + YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  +          VA LR  VE+  T FP+PG+
Sbjct:  325 RAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.892e-38
Identity = 79/158 (50.00%), Postives = 109/158 (68.99%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 473
            + YQ +VV+NCRALA  L+ LGY++V+GGSDNHL+LVDLR  G DG R EK+L+  SI  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  V   + L++FM  +          V  LR  VE+  T FP+PG+
Sbjct:  325 RAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHQRAVTALRAEVESFATLFPLPGL 481          
BLAST of DR908509 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 3
Query:    3 KVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 473
            K+YQ +V++NCRAL+  L ELGYK+V+GGSDNHL+L+DLR  G DG R EK+L+  SI  NKN+ PGDKSAL P G+R+G+PA+T+RG  E++F  +A FIH G+E+TL+ +  +   + L++F   +      + + VA LR  VE   + F +PG+
Sbjct:  319 KIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDE-KIQSAVATLREEVENFASNFSLPGL 475          
The following BLAST results are available for this feature:
BLAST of DR908509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_RABIT1.812e-4054.19Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN4.036e-4053.25Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN4.036e-4053.55Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH8.991e-4051.28Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB7.612e-3950.00Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_CAEEL7.612e-3953.21Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_HUMAN1.298e-3850.00Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_BOVIN1.298e-3850.63Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_SHEEP2.892e-3850.00Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_MOUSE8.416e-3848.10Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16637 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-42_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908509 ID=DR908509; Name=DR908509; organism=Citrus sinensis; type=EST; length=625bp
TTAAAGTTTACCAGAACAAGGTGGTCTCTAATTGCAGAGCGCTTGCAAGC
CGATTGGTTGAATTAGGTTACAAGCTGGTGTCAGGAGGGAGCGACAATCA
CCTGGTTCTTGTAGATCTAAGGCCGATGGGTATTGATGGGGCTCGGGTAG
AGAAAATTCTTGACATGGCCTCCATCACTCTCAACAAAAATTCAGTGCCT
GGTGACAAGAGTGCTCTAGTGCCGGGTGGTATTCGCATTGGCTCACCTGC
AATGACAACTAGAGGATTTTCTGAGAAAGAATTTGTTGCAATTGCTGACT
TTATACACGAGGGTGTAGAAATAACCCTGGAAGCTAAAAAGTTGGTTCAA
GGATCAAAGCTCCAAGACTTCATGAATTTTGTCACATCACCCAATTTCTC
GTTGATGAATAATGTCGCCGATCTTCGTGGTCGGGTTGAAGCTCTCACAA
CCCAGTTTCCCATCCCCGGAGTATGATTGTATAGTTGTTTTACAGGTTAA
AACCCGTTTGATGCTTTCTCATGGGGGAAAATGACAGGCACTATGTTTTT
GCTTGTGTGAACTGCAGGGGAAAATTAAATTATTATAATATAGGGGTTAA
ATTACTTATGGAAATGATGAATTAT
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