DR908507

Overview
NameDR908507
Unique NameDR908507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12440 contig Csv1_Contig12440:272..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.180e-93
Identity = 165/208 (79.33%), Postives = 186/208 (89.42%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNP-KMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            DPS L F++AA+ILRAETFGIPI +W   P K+ AEAVDKV+VPDF PK+  KI+TDEKAT+LS+ASVDDAAVI +LI KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK IKH+++SWTVWDRW
Sbjct:  753 DPSQLSFILAAAILRAETFGIPISEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTDEKATSLSSASVDDAAVIEELIAKLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRW 960          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.061e-92
Identity = 164/208 (78.85%), Postives = 185/208 (88.94%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNP-KMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            D S L F++AA+ILRAETFGIPIP+W   P K+ AEAVDKV+VPDF PK+  KI+T EKAT+LS+ASVDDAAVI +LI KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK IKH+++SWTVWDRW
Sbjct:  753 DQSQLSFILAAAILRAETFGIPIPEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTHEKATSLSSASVDDAAVIEELIAKLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRW 960          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.387e-86
Identity = 151/207 (72.95%), Postives = 178/207 (85.99%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            D SHL+F+M+ASILRAE+FG+ IP+W  +   LA+ V+K+ VP F PK+   I+TDEKA+ LS+ SVDD AVI DL+ KL++  K L  GF++KPIQFEKDDDTN+HMD+I+GLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK + G H +EDYRNTFANLALPLFSMAEPVPPKV+KH++ SWTVWDRW
Sbjct:  756 DQSHLNFIMSASILRAESFGVAIPEWAKDTSKLADVVNKIAVPTFEPKQGVNIVTDEKASNLSSTSVDDVAVIEDLLAKLQEYAKMLLPGFQMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDRW 962          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 5.500e-45
Identity = 94/212 (44.34%), Postives = 133/212 (62.74%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            +P HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F PK   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYK + G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+
Sbjct:  758 NPLHLDYVMAAANLFAQTYGLT---GSQDRAAVATFLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.381e-45
Identity = 94/212 (44.34%), Postives = 132/212 (62.26%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            +P HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F PK   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYK + G   L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+
Sbjct:  758 NPLHLDYVMAAANLFAQTYGLA---GSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRHLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.381e-45
Identity = 94/212 (44.34%), Postives = 132/212 (62.26%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            +P HL +V+AA+ L A+T+G+     + +   +A  +  V VP+F PK   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDDTN+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYK + G  +L  Y+N F NLALP F  +EP+     ++ +  WT+WDR+
Sbjct:  758 NPLHLDYVIAAANLFAQTYGLT---GSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPEKLPGFKMYPIDFEKDDDTNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLNSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.037e-43
Identity = 91/213 (42.72%), Postives = 139/213 (65.26%), Query Frame = 2
Query:    2 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKI-LTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            +P HL +VMAA+ L A+T+G+     + +  ++A+ +  + VP F PK   +I +++++  + S  ++DD+         LE+ +  LP+     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+T+   GLVCLELYK + G  +LE Y+N+F NLALPLFS + P+ P+  ++ D  WT+WDR+
Sbjct:  757 NPLHLDYVMAAANLFAQTYGL---GGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDS--------HLEELKTALPTPDKLLGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIPAIATTTSAIVGLVCLELYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQYYDQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.769e-43
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 2
Query:   11 HLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F PK   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYK + G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+
Sbjct:  761 HLDYVMAAANLFAQTYGLT---GSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.769e-43
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 2
Query:   11 HLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRW 622
            HL +VMAA+ L A+T+G+     + +   +A  +  V VP+F PK   KI   ++    + ASVDD+        +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYK + G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+
Sbjct:  761 HLDYVMAAANLFAQTYGLT---GSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS--------RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRF 958          
BLAST of DR908507 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 84/207 (40.58%), Postives = 125/207 (60.39%), Query Frame = 2
Query:   11 HLHFVMAASILRAETFGIPIPDWTNNPKM--LAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKGLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVIKHRDMSWTVWDRW 622
            H HFV+A + LRA  +GI   D  + P +      +D +++P+F P  + KI  ++     +  + + +  I+ L+  L     +  +GF+L+P+ FEKDDDTN+H++ I   +N RA+NY I   D+ K KFIAGRIIPAIAT+T++ TGLV LELYK +D    +E Y+N F NLALP F  +EP+  PK   +      +WDR+
Sbjct:  727 HFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPD--PSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRF 931          
The following BLAST results are available for this feature:
BLAST of DR908507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE12_WHEAT3.180e-9379.33Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT2.061e-9278.85Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT8.387e-8672.95Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_HUMAN5.500e-4544.34Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT9.381e-4544.34Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_BOVIN9.381e-4544.34Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1Y_MOUSE1.037e-4342.72Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_RAT1.769e-4344.02Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE1.769e-4344.02Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_YEAST2.923e-3840.58Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16635 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-23_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908507 ID=DR908507; Name=DR908507; organism=Citrus sinensis; type=EST; length=625bp
GGATCCCAGTCACCTACACTTTGTTATGGCAGCCTCCATACTACGAGCAG
AGACATTTGGCATCCCTATTCCTGATTGGACCAATAATCCTAAGATGTTG
GCTGAGGCTGTTGACAAAGTGATGGTACCAGATTTTCTGCCAAAGAAAGA
TGCAAAAATCTTAACGGATGAGAAGGCTACTACTCTCTCCACTGCTTCTG
TGGATGATGCAGCGGTAATTAATGATCTGATTATAAAGTTAGAGCAGTGC
AGAAAGAACCTGCCATCTGGGTTCAGGTTGAAACCAATTCAGTTCGAAAA
GGATGATGACACAAACTACCACATGGATATGATAGCTGGGCTTGCTAACA
TGAGGGCAAGGAACTATAGCATTCCTGAGGTCGACAAGCTGAAAGCCAAG
TTTATTGCTGGAAGGATCATTCCAGCAATTGCAACCTCCACTGCAATGGC
TACCGGTCTTGTGTGCCTGGAGCTATACAAGGGTCTGGATGGAGGACACA
AACTGGAAGACTACCGAAATACATTTGCCAACCTAGCTTTGCCTCTGTTC
TCTATGGCTGAGCCAGTCCCACCAAAGGTCATAAAGCACCGTGATATGAG
CTGGACTGTTTGGGACAGATGGATA
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