DR908491

Overview
NameDR908491
Unique NameDR908491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8070 contig Csv1_Contig8070:112..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908491 vs. ExPASy Swiss-Prot
Match: TXLA_SYNY3 (Thiol:disulfide interchange protein txlA homolog OS=Synechocystis sp. (strain PCC 6803) GN=txlA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 2 
Query:    5 MLNVDNTKWEQELDEFGVEGIPHFAFLDREGNEEGNVVGRLPRQYLLENVDALAHGKASIPHARIVGQYSSAENRKVH-QVVDPRSHG*R*PS 280
            MLNVDN KW  E+  + V+GIPHF +LD  G      +G  P + L +N+ AL      IP+A + GQ S  ENR +      PRSHG   PS
Sbjct:   89 MLNVDNNKWLPEVLRYRVDGIPHFVYLDDTGTAIAESIGEQPLRVLEQNITALV-AHEPIPYANVTGQTSVVENRTIEADPTSPRSHGNPRPS 180
The following BLAST results are available for this feature:
BLAST of DR908491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TXLA_SYNY32.784e-1243.01Thiol:disulfide interchange protein txlA homolog O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16619 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908491 ID=DR908491; Name=DR908491; organism=Citrus sinensis; type=EST; length=630bp
TGTTATGCTGAATGTTGACAACACGAAATGGGAACAAGAACTTGATGAGT
TTGGTGTTGAGGGTATTCCACATTTTGCGTTTCTGGACAGAGAGGGGAAT
GAGGAGGGTAATGTTGTAGGTAGACTTCCAAGGCAGTACCTGCTTGAGAA
TGTGGATGCCCTTGCCCATGGAAAAGCATCAATTCCTCATGCTCGCATTG
TGGGGCAGTATTCAAGTGCTGAAAACAGGAAGGTCCATCAAGTTGTTGAT
CCCAGAAGTCATGGGTAGAGGTGACCTTCCTTTTGAAAAGTGACCGATCA
ATTTTGTCACTGGAAATAAGCACACAAGCTTATTTTATTCGAACTCATTG
ATAGGATCATCACATCCCAAGTTTCTAGCAAATTTGTACTGTAATGAGTA
ATGTCCATCTGGCAGTCACTCATAGGGAAGACCTTCGAAGAGAAGTAGGT
TCATACCACTTGACTTGATTGATTAAGGCATTTGTTAACCTGGGGAGTCT
TCACTCCCAATTTGAAAAATCTTAGAACAGGCATAACATGCAAGCTCGTC
CCATTCAAATATTTCTGTAACTTCCACCATTCAGTCATGACCTGTTTTCT
GAAGCTACAGCTAAATATTTTGTTTTTGAA
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