DR908490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH33_ARATH (Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 9.910e-42 Identity = 83/149 (55.70%), Postives = 100/149 (67.11%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447 GM+YPDVT V+QVGIP DREQYIH +LL+APWE YF + ++ Q+D MAKID ++KEAAYHAWLGYYNS+RE GRDKTTL ELAN+F SIGL++ P LFR+TA+KMGLK I GI +RK Sbjct: 697 GMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTAVKMGLKGISGIPIRK 845
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH48_ARATH (Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.208e-41 Identity = 83/149 (55.70%), Postives = 100/149 (67.11%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447 GM+YPDVT V+QVGIP DREQYIH +LL+APWE YF + ++ Q+D MAKID ++KEAAYHAWLGYYNS+RE GRDKTTL ELAN+F SIGL++ P LFR+TA+KMGLK I GI +RK Sbjct: 650 GMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLDSIVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTAVKMGLKGISGIPIRK 798
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.188e-40 Identity = 78/149 (52.35%), Postives = 102/149 (68.46%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447 G++YP VT V+QVG+P DRE YIH +LLLAPWEEYF + E++ ++D + +D ++KEAAYHAWLGYYNSI ++GRDKT LV+LAN+F +SIGL++ P L+RKTALKMGLKD+PGIR+RK Sbjct: 663 GVNYPGVTLVIQVGVPSDREHYIHRLGRTGREGKSGKGILLLAPWEEYFLNEIHDLPVQKSQTPNIDEEMKRKVDGSIKIVDMSIKEAAYHAWLGYYNSIGDVGRDKTMLVDLANRFCKSIGLEKPPALYRKTALKMGLKDVPGIRIRK 811
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH31_ARATH (DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31 Identity = 68/148 (45.95%), Postives = 89/148 (60.14%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLR 444 G+DYPDVT V+QVG+P DREQYIH +LLLAPWEEYF +PE ++ + ++ KEAAY AWLGYYNS + IGRDK LVELAN+F++S+GL P + + KMGLK++PG+R + Sbjct: 569 GVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSIDPETVKKVQKALCHVEMRNKEAAYQAWLGYYNSQKMIGRDKDRLVELANEFSRSMGLDNPPAIPKLILGKMGLKNVPGLRAK 716
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH26_ARATH (DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana GN=RH26 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30 Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTAL-KMGLKDIPGIRLR 444 G+DYPDV+ VVQ+G+P DREQYIH VLLLAPWEEYF +PE ++ +++++ KEAAY AWLGYY S + I RD T LVELAN+F++S+GL SPP K L KMGLK++PG+R + Sbjct: 703 GVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIARDTTRLVELANEFSRSMGLD-SPPAIPKNVLGKMGLKNVPGLRTK 850
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH31_ORYSJ (DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa subsp. japonica GN=Os06g0526600 PE=3 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28 Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438 G+DYP+VT VVQ+G+P DREQYIH +LLLAPWEEYF + + + +++ +A ++ KE AY AWLGYYNS + IGRDK LV LAN+F++S+GL P + + KMGL +IPG+R Sbjct: 400 GVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPWEEYFLRSIKDLPITEATLPLIDLDTKRKVEKALAHVEVKDKELAYQAWLGYYNSNKFIGRDKYQLVSLANEFSRSLGLNNPPAVPKLVLRKMGLNNIPGLR 545
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28 Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438 G+DYPDVT V+QVG+P DREQYIH +LLLAPWE YF + IQ + + + +++ KE+AY AWLGYYNS + I RDK+ LV LA +F+QS+GL P + + KMGL ++PG+R Sbjct: 389 GVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKDGLGLLLLAPWETYFLNSVQDLSVSQAVVPTIDSSIQTGVKDALGRVETKSKESAYQAWLGYYNSNKAISRDKSRLVRLAEEFSQSMGLAIPPAIPKLILRKMGLNNVPGLR 534
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH25_ARATH (DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana GN=RH25 PE=2 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28 Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRL 441 G+DYPDV+ VVQ+G+P DREQYIH VLLLAPWEEYF + E ++ + +++ KEAAY AWLGYY S ++I RD T LVELAN+F++S+GL P + KMGLK++PGIR+ Sbjct: 401 GVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKSQKKIARDTTRLVELANEFSRSMGLSIPPAIPVNILGKMGLKNVPGIRV 547
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.814e-27 Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438 G+DYPDVT V+QVG+P DR+QYIH +LLLAPWE+YF + Q + + + K++ KE AY AWLGYYNS + IGR+K+ LV+LA +F+QS+ L P + ++ KMGL ++PG+R Sbjct: 447 GVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWEKYFLSSIKDLSISEATVPSVDSSTQTIVKDAVRKVEMRSKECAYQAWLGYYNSNKTIGREKSRLVKLAEEFSQSMELSVPPAIPKQILRKMGLNNVPGLR 592
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: MS116_PHANO (ATP-dependent RNA helicase MSS116, mitochondrial OS=Phaeosphaeria nodorum GN=MSS116 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13 Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 1 Query: 1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXN--PEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNS-IREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRL 441 GMD+P+V VVQ+G+P EQY+H VL+L E +F PE + + A ++ K AY A+LGY + ++++ T LV +AN++++++G P + + T KMGLK +PG+ + Sbjct: 396 GMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAGKDGRAVLVLFEKEAFFPRINRTLPIKPYPVDIAAKVPEQEAAITRAFANVEEEAKAKAYQAFLGYNKTFLKKLQLSTTELVRVANEYSRAMGCPEPPLIEKSTIGKMGLKGVPGLNI 545 The following BLAST results are available for this feature:
BLAST of DR908490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908490 ID=DR908490; Name=DR908490; organism=Citrus sinensis; type=EST; length=630bpback to top |