DR908490

Overview
NameDR908490
Unique NameDR908490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH33_ARATH (Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.910e-42
Identity = 83/149 (55.70%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447
            GM+YPDVT V+QVGIP DREQYIH              +LL+APWE YF                 +  ++ Q+D  MAKID ++KEAAYHAWLGYYNS+RE GRDKTTL ELAN+F  SIGL++ P LFR+TA+KMGLK I GI +RK
Sbjct:  697 GMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTAVKMGLKGISGIPIRK 845          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH48_ARATH (Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.208e-41
Identity = 83/149 (55.70%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447
            GM+YPDVT V+QVGIP DREQYIH              +LL+APWE YF                 +  ++ Q+D  MAKID ++KEAAYHAWLGYYNS+RE GRDKTTL ELAN+F  SIGL++ P LFR+TA+KMGLK I GI +RK
Sbjct:  650 GMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDLDSIVKHQVDQSMAKIDTSIKEAAYHAWLGYYNSVRETGRDKTTLAELANRFCHSIGLEKPPALFRRTAVKMGLKGISGIPIRK 798          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.188e-40
Identity = 78/149 (52.35%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLRK 447
            G++YP VT V+QVG+P DRE YIH              +LLLAPWEEYF                 + E++ ++D  +  +D ++KEAAYHAWLGYYNSI ++GRDKT LV+LAN+F +SIGL++ P L+RKTALKMGLKD+PGIR+RK
Sbjct:  663 GVNYPGVTLVIQVGVPSDREHYIHRLGRTGREGKSGKGILLLAPWEEYFLNEIHDLPVQKSQTPNIDEEMKRKVDGSIKIVDMSIKEAAYHAWLGYYNSIGDVGRDKTMLVDLANRFCKSIGLEKPPALYRKTALKMGLKDVPGIRIRK 811          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH31_ARATH (DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31
Identity = 68/148 (45.95%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRLR 444
            G+DYPDVT V+QVG+P DREQYIH              +LLLAPWEEYF                 +PE   ++   +  ++   KEAAY AWLGYYNS + IGRDK  LVELAN+F++S+GL   P + +    KMGLK++PG+R +
Sbjct:  569 GVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEYFLSSLKDLPITKSPLPSIDPETVKKVQKALCHVEMRNKEAAYQAWLGYYNSQKMIGRDKDRLVELANEFSRSMGLDNPPAIPKLILGKMGLKNVPGLRAK 716          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH26_ARATH (DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana GN=RH26 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTAL-KMGLKDIPGIRLR 444
            G+DYPDV+ VVQ+G+P DREQYIH              VLLLAPWEEYF                 +PE   ++   +++++   KEAAY AWLGYY S + I RD T LVELAN+F++S+GL  SPP   K  L KMGLK++PG+R +
Sbjct:  703 GVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDLPITKSPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIARDTTRLVELANEFSRSMGLD-SPPAIPKNVLGKMGLKNVPGLRTK 850          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH31_ORYSJ (DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa subsp. japonica GN=Os06g0526600 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28
Identity = 64/146 (43.84%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438
            G+DYP+VT VVQ+G+P DREQYIH              +LLLAPWEEYF                 + + + +++  +A ++   KE AY AWLGYYNS + IGRDK  LV LAN+F++S+GL   P + +    KMGL +IPG+R
Sbjct:  400 GVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPWEEYFLRSIKDLPITEATLPLIDLDTKRKVEKALAHVEVKDKELAYQAWLGYYNSNKFIGRDKYQLVSLANEFSRSLGLNNPPAVPKLVLRKMGLNNIPGLR 545          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH26_ORYSJ (DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa subsp. japonica GN=Os01g0618500 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438
            G+DYPDVT V+QVG+P DREQYIH              +LLLAPWE YF                 +  IQ  + + + +++   KE+AY AWLGYYNS + I RDK+ LV LA +F+QS+GL   P + +    KMGL ++PG+R
Sbjct:  389 GVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKDGLGLLLLAPWETYFLNSVQDLSVSQAVVPTIDSSIQTGVKDALGRVETKSKESAYQAWLGYYNSNKAISRDKSRLVRLAEEFSQSMGLAIPPAIPKLILRKMGLNNVPGLR 534          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH25_ARATH (DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana GN=RH25 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRL 441
            G+DYPDV+ VVQ+G+P DREQYIH              VLLLAPWEEYF                 + E   ++   + +++   KEAAY AWLGYY S ++I RD T LVELAN+F++S+GL   P +      KMGLK++PGIR+
Sbjct:  401 GVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKSQKKIARDTTRLVELANEFSRSMGLSIPPAIPVNILGKMGLKNVPGIRV 547          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: RH25_ORYSJ (DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sativa subsp. japonica GN=Os01g0618400 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.814e-27
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXNPEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNSIREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIR 438
            G+DYPDVT V+QVG+P DR+QYIH              +LLLAPWE+YF                 +   Q  + + + K++   KE AY AWLGYYNS + IGR+K+ LV+LA +F+QS+ L   P + ++   KMGL ++PG+R
Sbjct:  447 GVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWEKYFLSSIKDLSISEATVPSVDSSTQTIVKDAVRKVEMRSKECAYQAWLGYYNSNKTIGREKSRLVKLAEEFSQSMELSVPPAIPKQILRKMGLNNVPGLR 592          
BLAST of DR908490 vs. ExPASy Swiss-Prot
Match: MS116_PHANO (ATP-dependent RNA helicase MSS116, mitochondrial OS=Phaeosphaeria nodorum GN=MSS116 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.666e-13
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:    1 GMDYPDVTSVVQVGIPPDREQYIHXXXXXXXXXXXXXXVLLLAPWEEYFXXXXXXXXXXXXXXXXXN--PEIQLQMDNHMAKIDNNVKEAAYHAWLGYYNS-IREIGRDKTTLVELANKFAQSIGLQRSPPLFRKTALKMGLKDIPGIRL 441
            GMD+P+V  VVQ+G+P   EQY+H              VL+L   E +F                    PE +  +    A ++   K  AY A+LGY  + ++++    T LV +AN++++++G    P + + T  KMGLK +PG+ +
Sbjct:  396 GMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAGKDGRAVLVLFEKEAFFPRINRTLPIKPYPVDIAAKVPEQEAAITRAFANVEEEAKAKAYQAFLGYNKTFLKKLQLSTTELVRVANEYSRAMGCPEPPLIEKSTIGKMGLKGVPGLNI 545          
The following BLAST results are available for this feature:
BLAST of DR908490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RH33_ARATH9.910e-4255.70Putative DEAD-box ATP-dependent RNA helicase 33 OS... [more]
RH48_ARATH2.208e-4155.70Probable DEAD-box ATP-dependent RNA helicase 48 OS... [more]
RH48_ORYSJ3.188e-4052.35DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]
RH31_ARATH2.705e-3145.95DEAD-box ATP-dependent RNA helicase 31 OS=Arabidop... [more]
RH26_ARATH2.991e-3046.98DEAD-box ATP-dependent RNA helicase 26 OS=Arabidop... [more]
RH31_ORYSJ1.257e-2843.84DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sa... [more]
RH26_ORYSJ1.641e-2843.15DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sa... [more]
RH25_ARATH1.641e-2844.90DEAD-box ATP-dependent RNA helicase 25 OS=Arabidop... [more]
RH25_ORYSJ1.814e-2741.78DEAD-box ATP-dependent RNA helicase 25 OS=Oryza sa... [more]
MS116_PHANO5.666e-1329.33ATP-dependent RNA helicase MSS116, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16618 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908490 ID=DR908490; Name=DR908490; organism=Citrus sinensis; type=EST; length=630bp
GGAATGGATTACCCAGATGTTACTTCAGTTGTTCAGGTGGGTATTCCTCC
TGATCGGGAGCAATACATCCATCGTCTTGGAAGAACAGGGCGAGAAGGCA
AAGAAGGAGAAGGTGTCTTGTTGCTTGCCCCATGGGAAGAATATTTCCTG
GATGATTTAAAAGATCTGCCCCTTGACAAACTTCAGTTGCCACATCTAAA
TCCAGAAATTCAACTTCAGATGGACAACCACATGGCTAAAATCGATAACA
ACGTTAAAGAGGCAGCCTATCATGCTTGGCTTGGTTATTACAACTCGATC
AGGGAAATTGGGAGGGATAAGACAACGCTTGTTGAGCTAGCAAACAAATT
TGCTCAATCCATTGGTTTGCAGAGATCTCCCCCTCTCTTCAGGAAGACAG
CATTGAAAATGGGATTGAAAGATATCCCCGGTATCCGACTTCGAAAATAG
ACCAAATATACGCGCTTTATTCATTGATGTTGCTAGCTGCGGAGCTACCT
GGGGGGTTATTGAATCATGGAGTAGACCAATGTACTTCAGAAGAAATTTT
TGTAAAAGTGACAAGATGTTAAATTATATTTCTTTTTCTTCCCCCCCAAC
CCCAATCAGAATGAAAGTTATTATTGAGAA
back to top