DR908487

Overview
NameDR908487
Unique NameDR908487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6357 contig Csv1_Contig6357:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908487 vs. ExPASy Swiss-Prot
Match: GS1_DROME (GS1-like protein OS=Drosophila melanogaster GN=Gs1l PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.582e-39
Identity = 88/162 (54.32%), Postives = 108/162 (66.67%), Query Frame = 1
Query:    1 SAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGD-DPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLDFNPKDWGLPPFED 483
            S E++  Q+    + L   ++LMPGA  L+RHLHA  +P C+AT S A   ELKT +HRELFSL +H V G  D EV  GKP+PDIFL AA RF G P      LVFED+P+GV AA +AGM VVMVPDPRL     S+A Q+L+SL DF P+ +GLP F D
Sbjct:   71 SWEEYARQQRANTEILMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNGKPAPDIFLVAAGRF-GVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPRLSQEKTSHATQVLASLADFKPEQFGLPAFTD 231          
BLAST of DR908487 vs. ExPASy Swiss-Prot
Match: HDD1A_HUMAN (Haloacid dehalogenase-like hydrolase domain-containing protein 1A OS=Homo sapiens GN=HDHD1A PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 3.525e-39
Identity = 84/160 (52.50%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 SAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLDFNPKDWGLPPFE 480
            S E+ + + +  L+ +FPT+ LMPGA  LI HL   GIP  +AT S +  F++KT +H+E FSL  H+V GDDPEV+ GKP PDIFLA AKRF   P   +K LVFEDAP+GV AA  AGM VVMVPD  L     + A  +L+SL DF P+ +GLP +E
Sbjct:   70 SKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPA-MEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228          
BLAST of DR908487 vs. ExPASy Swiss-Prot
Match: HDD1A_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 1A OS=Mus musculus GN=Hdhd1a PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.459e-34
Identity = 78/161 (48.45%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    1 SAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVKQGKPSPDIFLAAAKRFEGGPIDSQKILVFEDAPSGVLAAKNAGMSVVMVPDPRLDSSYHSNADQLLSSLLDFNPKDWGLPPFED 483
            S E+ L + +E LQ +  T+  MPGA  LI HL    +P  +AT S    F+ KT +H   F L HH+V GDDPEVK GKP  DIFL  AKRF   P D +  LVFED+P+GV AA + GM VVMVP   L +     A  +LSSL DF P+ +GLP F +
Sbjct:   75 SKEELLKESQEKLQMVLHTAGFMPGAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGFFGLFHHIVLGDDPEVKNGKPGMDIFLTCAKRFSPPP-DPKDCLVFEDSPNGVEAAIHCGMQVVMVPHENLSADLTRKATLVLSSLHDFKPELFGLPAFTE 234          
BLAST of DR908487 vs. ExPASy Swiss-Prot
Match: YKD3A_YEAST (Putative uncharacterized hydrolase YKL033W-A OS=Saccharomyces cerevisiae GN=YKL033W-A PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   22 QREETLQTL-FPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMHHVVRGDDPEVK--QGKPSPDIFLAAAKRFE---GGPIDSQKILVFEDAPSGVLAAKNAGMSVVMVPDPRLDS------SYHSNADQLLSSLLDFNPKDWGL 468
            +R   LQ+L + T E +PGA +L+++L  K IP+ + T S    F  KT    E F L   +V GDDP +   +GKP PDI+    K         I   + +VFED   GV +AK  G  V+ VP P   +      +  +   +LLSSL       +GL
Sbjct:   76 ERNVALQSLKWGTCEFLPGALNLLKYLKLKNIPIALCTSSNKTKFRGKTSHLEEGFDLFDTIVTGDDPRIAKGRGKPFPDIWQLGLKELNEKFHTDIKPDECIVFEDGIPGVKSAKAFGAHVIWVPHPEAHAVLGDTEALLAGKGELLSSLEKLEMSKYGL 236          
BLAST of DR908487 vs. ExPASy Swiss-Prot
Match: YJM7_SCHPO (Putative uncharacterized hydrolase C1020.07 OS=Schizosaccharomyces pombe GN=SPCC1020.07 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 53/167 (31.74%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 SAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGSLARHFELKTQKHRELFSLMH-HVVRGDDPE--VKQGKPSPDIFLAAAKRFEG-------GPIDSQKILVFEDAPSGVLAAKNAGMSVVMVPD----PRLDSSYHSNADQLLSSLLDFNPKD 459
            + E+++  + ET   L+  ++ +PG  +L+  L +  IP+ +AT S   +FE K+     LF     +++ GDDP   V +GKP PDI+  A K             I  +  LVFED+ +GV + + AGM VV VPD    P    S    AD+ ++ +L     D
Sbjct:   66 TCEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFDGNIITGDDPRLPVGRGKPHPDIWFIALKMINDKRKAQGQAEILPENCLVFEDSITGVQSGRAAGMKVVWVPDVNILPFFSLSPEQAADKHITKVLSLENFD 232          
The following BLAST results are available for this feature:
BLAST of DR908487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GS1_DROME1.582e-3954.32GS1-like protein OS=Drosophila melanogaster GN=Gs1... [more]
HDD1A_HUMAN3.525e-3952.50Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDD1A_MOUSE4.459e-3448.45Haloacid dehalogenase-like hydrolase domain-contai... [more]
YKD3A_YEAST1.491e-1334.16Putative uncharacterized hydrolase YKL033W-A OS=Sa... [more]
YJM7_SCHPO4.339e-1331.74Putative uncharacterized hydrolase C1020.07 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16615 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908487 ID=DR908487; Name=DR908487; organism=Citrus sinensis; type=EST; length=630bp
TCGGCTGAGGACTTTCTTGTACAAAGAGAAGAGACCCTGCAGACCTTGTT
CCCAACGAGTGAGCTCATGCCAGGGGCTAGCCATTTGATCAGACATCTCC
ACGCCAAAGGAATACCAATGTGTGTGGCAACTGGTTCTCTCGCGCGTCAT
TTTGAATTGAAGACACAAAAACATCGTGAACTTTTCTCATTGATGCATCA
TGTTGTTCGTGGGGACGATCCAGAAGTTAAACAAGGCAAGCCATCCCCAG
ACATATTCCTAGCAGCTGCCAAAAGATTTGAGGGTGGGCCAATAGATTCA
CAAAAAATTCTCGTGTTTGAAGATGCCCCTTCAGGAGTACTTGCGGCTAA
GAATGCTGGGATGTCTGTAGTAATGGTTCCAGATCCAAGGCTGGATAGCT
CTTATCATTCTAATGCAGACCAACTATTGAGCTCATTATTAGATTTCAAC
CCAAAGGATTGGGGTTTGCCGCCATTTGAAGATGCACTAAACTAGATTTT
CATATTCATGAAATTATCATGGCATCGACCTGAGTACTGAGTCATTTCCA
TCGATTCTTGATATTTGAAGGCTATTCTTTATTAATATTCTTGGCAAGGA
TATCACTCTTTCATTTGAACTTCTGATCTG
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