DR908482

Overview
NameDR908482
Unique NameDR908482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length360
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8822 contig Csv1_Contig8822:356..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908482 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.764e-14
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 EAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGH 117
            +AV MSR+LV +DGLF+GSSSA+NCV AVR+A+ LGPGH
Sbjct:  316 QAVAMSRYLVTHDGLFVGSSSAVNCVAAVRLAKKLGPGH 354          

HSP 2 Score: 36.965 bits (84), Expect = 2.764e-14
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 2
Query:  122 IVTILCDSGMRHLSKFYDVHYLSQQGLTP-AAAGLEFL 232
            IVT+LCD G RH SK Y+  +L ++ + P   + L+F+
Sbjct:  356 IVTLLCDPGSRHFSKLYNEEFLRKKNIVPQVPSSLDFV 393          
BLAST of DR908482 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.709e-12
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 EAVEMSRFLVKNDGLFLGSSSAMNCVGAVRVAQSLGPGHT 120
            E V+M+ +L+K+DGLFLG SSA+NCVGAV++A+ LGPG T
Sbjct:  300 EGVDMAHYLLKHDGLFLGGSSALNCVGAVKLARKLGPGKT 339          

HSP 2 Score: 30.0314 bits (66), Expect = 8.709e-12
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  122 IVTILCDSGMRHLSKFYDVHYLS 190
            IVT+LCDSG R+ S+ Y   +L+
Sbjct:  340 IVTVLCDSGHRYTSRLYSKSWLN 362          
The following BLAST results are available for this feature:
BLAST of DR908482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CYSK2_SCHPO2.764e-1471.79Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSK_DICDI8.709e-1265.00Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16610 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908482 ID=DR908482; Name=DR908482; organism=Citrus sinensis; type=EST; length=360bp
GAGGCTGTTGAAATGTCAAGGTTTCTTGTGAAGAATGATGGGCTCTTTCT
TGGGAGCTCTTCAGCAATGAATTGTGTAGGAGCTGTCAGAGTGGCACAGT
CGCTTGGCCCTGGTCACACCGATTGTTACAATTCTGTGTGACAGTGGAAT
GAGGCATCTGAGTAAGTTTTATGACGTCCATTATCTGTCTCAGCAGGGTT
TGACACCTGCTGCAGCTGGATTAGAATTCCTTGGCATCAAATGAAATTTG
AGGATGCCTGAGATCACTGTTCCTGTACATTCCCACCGCTCGAAAAGCAT
TTTATTCATCAACATATTATTTGTGAGAGGTTGCCTTAGGGGATGTGACC
TGAAAATTTT
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