DR908479

Overview
NameDR908479
Unique NameDR908479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908479_ssr572 microsatellite DR908479_ssr572:572..586. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11195 contig Csv1_Contig11195:701..1332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.206e-55
Identity = 100/152 (65.79%), Postives = 119/152 (78.29%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 456
            LIAFETIPN               + IP WFSFNSKDG+NVVSGDSI EC SIA++CE+VVAVGINCT PRFI GL+L + KVTSKP+++YPNSGE+Y+A+ K+WVE+TGV DEDFVSY+ KW DAG SL GGCCRTTP TI+AI + L N+
Sbjct:  179 LIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRLVNR 330          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.508e-55
Identity = 99/157 (63.06%), Postives = 124/157 (78.98%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPSA 471
            LIAFETIPN               I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+GINCTAPR+IH LI+S+R++T KP+++YPNSGE Y+   KKW++S G  +EDFVSY+ KWRDAGASLFGGCCRTTPNTI+AI++VLS++  PSA
Sbjct:  185 LIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRDAGASLFGGCCRTTPNTIRAIAKVLSDE--PSA 339          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.741e-54
Identity = 102/153 (66.67%), Postives = 117/153 (76.47%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 459
            LIAFETIPN               I IPAWFSFNSKDG+++VSGDS++EC +IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA L GGCCRTTPNTI+AI R L NKS
Sbjct:  178 LIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIRAIHRTL-NKS 329          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.879e-54
Identity = 99/150 (66.00%), Postives = 116/150 (77.33%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLS 450
            LIAFETIPN               I IP+W SFNSKDG++VVSGDS++ECA+IAD C +V AVGINCT PRFIHGLILS+RKVT KP++IYPNSGE Y+ E K+WVESTGV D DFVSY+ +W   GA+L GGCCRTTPNTI+AI R L+
Sbjct:  178 LIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCKDGAALIGGCCRTTPNTIRAIHRTLN 327          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.353e-51
Identity = 94/156 (60.26%), Postives = 119/156 (76.28%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKSLPS 468
            L+AFE +PN               I  PAWF+F SKDG NVVSGDSI EC SIA+SC++VVAVGINCT PRFIH LIL ++KVT+KP++IYPNSGETY+A  K+W +++GV DEDFVSY+ KW ++GASL GGCCRTTP+TI+ I ++LS+   P+
Sbjct:  179 LLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCESGASLVGGCCRTTPDTIRGIYKILSSGQSPT 334          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.014e-51
Identity = 94/150 (62.67%), Postives = 115/150 (76.67%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVR-DEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVL 447
            LIAFETIPN              GI IPAWFSF SKDG+N  SGD I ECA++ADSC +V AVG+NCTAPRFIHGLILS++KVTSKP+++YPNSGETY AE  +WV+S G    +DFVS +G+WR AGA+L GGCCRT+P T++AI+R +
Sbjct:  179 LIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHGLILSIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWRRAGAALIGGCCRTSPATVRAIARAV 328          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.001e-34
Identity = 65/153 (42.48%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNKS 459
            LIAFE IPN               + IP+W  F+S DG N+ SG+S  +C  I ++ E+V  VG+NCT P+FI G+I   RK T K + +YPNSGE ++   K+W+    +  + F +   +W++AGASL GGCCRTTP+TI+A+S++L  ++
Sbjct:  169 LIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEGIICEFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQEAGASLIGGCCRTTPSTIRAVSKILKGRT 321          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-33
Identity = 68/152 (44.74%), Postives = 88/152 (57.89%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAISRVLSNK 456
            L+AFETIPN               + IPAW  F S DG    SG+S  EC    +    + AVGINC  P+FI  LI    K+T K +++YPNSGE ++ + K+W+ S    D++F  +  KWRD GA L GGCCRTTP+TI AISR L  +
Sbjct:  175 LLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRDLGAKLIGGCCRTTPSTINAISRDLKRR 326          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.076e-23
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   85 AWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAIS 438
            AW SF++KDG+++  G    +CAS  D   Q+ A+GINCT  + I  LI  ++K TSKP+I+YPNSGE Y+ E K W  +     E + +    W + GA L GGCCRT P  I+ I+
Sbjct:  191 AWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCTPLQHIPSLIEELKKNTSKPIIVYPNSGEQYDPETKTW--NGAACAESYGASARTWHEKGARLIGGCCRTKPENIQEIA 306          
BLAST of DR908479 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 51/145 (35.17%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    1 LIAFETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTAPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVESTGVRDEDFVSYIGKWRDAGASLFGGCCRTTPNTIKAI 435
            L+A ET+PN                   AWFSF  +D  ++  G  + +  ++     QVVA+GINC A       +  +  +T  P+++YPNSGE Y+A  K W    G        Y+ +W+ AGA L GGCCRTTP  I A+
Sbjct:  164 LLACETLPNFSEIEALAELLTAYP-RARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTW-HHHGEHCAQLADYLPQWQAAGARLIGGCCRTTPADIAAL 306          
The following BLAST results are available for this feature:
BLAST of DR908479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HMT2_ARATH1.206e-5565.79Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
HMT3_ARATH3.508e-5563.06Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT2_MAIZE1.741e-5466.67Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT3_MAIZE3.879e-5466.00Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
SMTA_ASTBI2.353e-5160.26Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT4_MAIZE4.014e-5162.67Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT1_MAIZE2.001e-3442.48Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT1_ARATH1.694e-3344.74Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT_BACSU2.076e-2344.07Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI1.303e-1735.17Homocysteine S-methyltransferase OS=Escherichia co... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16607 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908479 ID=DR908479; Name=DR908479; organism=Citrus sinensis; type=EST; length=632bp
CTAATTGCATTTGAAACCATTCCGAATAAGCTGGAAGCCAAGGCCTATGC
TGAGCTTCTTGAGGAAGAAGGAATAACTATTCCAGCATGGTTTTCTTTCA
ATTCTAAGGATGGAATTAATGTGGTTAGTGGTGATTCTATATTAGAGTGT
GCCTCAATTGCAGATTCATGCGAGCAAGTTGTTGCTGTTGGAATTAACTG
TACAGCTCCTCGATTTATCCATGGACTCATACTCTCTGTTAGAAAGGTAA
CTAGTAAACCTGTAATCATATATCCAAACAGTGGCGAGACCTATAATGCT
GAGCTCAAGAAGTGGGTGGAATCAACTGGAGTAAGAGATGAGGACTTTGT
CTCATACATCGGTAAGTGGCGTGATGCGGGGGCTTCTTTATTTGGTGGAT
GCTGCAGGACTACACCAAATACAATCAAAGCCATATCCAGAGTTCTATCC
AACAAATCTTTGCCATCCGCAAATTTGAACATTCAGATGTAGATTGTAAT
GAGTTGCGGAGGAGATAGTTAAAATCAGAAATTTTCCCTTTTCAGGTCTT
TCAAGTCCTAAGTGGGCAGTATAATGTAATGTAATGATTACGTTCTCATG
TACCGCATATATGAATAAATTTTCTCTTGGCT
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