DR908473

Overview
NameDR908473
Unique NameDR908473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10418 contig Csv1_Contig10418:906..1538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908473 vs. ExPASy Swiss-Prot
Match: NCKP1_ARATH (Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 7.483e-90
Identity = 159/210 (75.71%), Postives = 182/210 (86.67%), Query Frame = 2
Query:    2 FKSTRPVGGYFAESVTDLRELQAFVRLFGCYGVDRLDRMMKDHTAALLNCIDTSLRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNN 631
            FKSTRPVGGYFAESVTDL+ELQAFVR+FG YGVDRLDRMMK HTAAL+NCI+TSLRSNRE++EA A SMHSGDR+ER+A ++QIVDLDT+IGFCIEAGQALAFD+               LIHS+++G+V+HIP+ IPEKKEIRR+KGVAN VGV  DHDSEWVR ILEEVGGAND+SWSLLPY FA F+TSN WNTTGFN+ETGGF+NN
Sbjct:  963 FKSTRPVGGYFAESVTDLKELQAFVRIFGGYGVDRLDRMMKVHTAALVNCIETSLRSNRELIEAAAASMHSGDRVERDASVRQIVDLDTVIGFCIEAGQALAFDDLLAEASGAVLEDNASLIHSMISGIVEHIPEEIPEKKEIRRIKGVANGVGVAGDHDSEWVRLILEEVGGANDNSWSLLPYFFASFMTSNAWNTTGFNIETGGFSNN 1172          
BLAST of DR908473 vs. ExPASy Swiss-Prot
Match: NCKP1_ORYSJ (Probable protein NAP1 OS=Oryza sativa subsp. japonica GN=NAP1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.059e-67
Identity = 121/211 (57.35%), Postives = 164/211 (77.73%), Query Frame = 2
Query:    2 FKSTRPVGG-YFAESVTDLRELQAFVRLFGCYGVDRLDRMMKDHTAALLNCIDTSLRSNREVLEAIAGSMHSGDRIEREACLKQIVDLDTLIGFCIEAGQALAFDNXXXXXXXXXXXXXXPLIHSLLAGVVKHIPQGIPEKKEIRRMKGVANSVGVVVDHDSEWVRSILEEVGGANDDSWSLLPYLFAIFITSNIWNTTGFNVETGGFNNN 631
            F+S++P+GG Y AE+ TD REL+A VRLFG YGVDRLD+++++HT+ALLNCID++LRSNR+ LE +AGS++SGDRIER+A LKQI+D++TL  FCI+AGQA+ F                PLI+SLL G+   +P+ +P+K EI R++ VA+SVGV   HD+EWV SIL E+G AND+SW+LLPYL A F+ SN+W+TT ++V TGGF+NN
Sbjct:  912 FRSSQPIGGGYLAEAFTDKRELKALVRLFGGYGVDRLDKLLREHTSALLNCIDSALRSNRDALEGLAGSVNSGDRIERDANLKQIIDIETLADFCIQAGQAITFRRLLVEAVGAVLEEKVPLIYSLLKGLAMQLPEEVPDKNEIIRLRRVASSVGVGDKHDAEWVHSILAEIGSANDNSWTLLPYLCAAFMASNMWSTTAYDVNTGGFSNN 1122          
The following BLAST results are available for this feature:
BLAST of DR908473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCKP1_ARATH7.483e-9075.71Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 ... [more]
NCKP1_ORYSJ3.059e-6757.35Probable protein NAP1 OS=Oryza sativa subsp. japon... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16601 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-22_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908473 ID=DR908473; Name=DR908473; organism=Citrus sinensis; type=EST; length=633bp
CTTCAAAAGCACTAGGCCTGTTGGTGGATATTTTGCTGAGTCGGTCACAG
ATCTAAGAGAGCTGCAGGCCTTTGTTCGTCTCTTTGGTTGCTACGGAGTG
GACAGACTGGACAGAATGATGAAAGATCACACAGCAGCTCTCTTGAATTG
CATTGACACATCATTACGGTCAAACCGTGAGGTATTAGAGGCAATTGCTG
GCAGCATGCATTCAGGTGACAGAATAGAAAGAGAGGCATGTTTGAAGCAG
ATTGTGGATTTGGACACGTTAATTGGATTCTGTATTGAAGCAGGGCAGGC
ATTGGCTTTTGATAACCTTCTTGCTGAAGCAGCTGGAGCCATTCTTGAAG
AAGGTGCCCCGTTAATACACTCGTTACTAGCCGGGGTAGTTAAGCATATA
CCTCAAGGAATACCTGAAAAGAAGGAAATCAGGAGGATGAAAGGGGTGGC
GAACAGTGTTGGTGTGGTTGTCGATCATGATTCTGAGTGGGTAAGATCAA
TTTTGGAAGAGGTTGGAGGTGCAAATGATGATTCATGGAGCTTGTTGCCT
TACCTATTTGCAATCTTCATAACGTCCAACATTTGGAACACTACTGGCTT
CAATGTTGAGACTGGGGGCTTCAACAACAATAT
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