DR908468

Overview
NameDR908468
Unique NameDR908468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: AUHM_DICDI (Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.106e-39
Identity = 74/147 (50.34%), Postives = 99/147 (67.35%), Query Frame = 2
Query:   59 VVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLR 499
            VV++RS V  VFC+GADLKER  MS  E   +V++LRS+F+ LE L +PTIA I+             CD R+  +++ +GLPETGLAIIPGAGGTQRLPRL+G   AK++IFTG  +  K A+ +GLV Y    G+A  KA+E+ +
Sbjct:   94 VVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDSKRALEIGLVQYETEKGEAFDKAIEIAK 240          

HSP 2 Score: 40.817 bits (94), Expect = 9.106e-39
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELEKSA 602
            KGPIAIRMAK+AI +G+ VD AS + +E+++
Sbjct:  245 KGPIAIRMAKQAIDRGMNVDQASGMIIEQAS 275          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: AUHM_HUMAN (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.619e-38
Identity = 73/169 (43.20%), Postives = 107/169 (63.31%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQ----AQLKALELLR 499
            ++ L  A + +  D     ++IRS VP +FCAGADLKER +MS SE+  +V+ +R+  + +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR +G S+AK++IF+ R + GK+A ++GL+++ +   Q    A  KAL+L R
Sbjct:  108 IKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAR 276          

HSP 2 Score: 36.1946 bits (82), Expect = 2.619e-38
Identity = 14/30 (46.67%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELEKS 599
            +GP+A+R+AK AI +G+EVD+ + L +E++
Sbjct:  281 QGPVAMRVAKLAINQGMEVDLVTGLAIEEA 310          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.814e-38
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL 493
            LR L+   + I  +S+   V++  +  K FCAGADLKER ++   ++   V+ ++ T + L+ALP P IA I+             CDLRI  EAA+LGLPETGLAIIPGAGGTQRLPRL+G+  AK+ I+TGR+V+  +A  +GLV +         KA EL
Sbjct:   33 LRNLQMIIQEIEFNSNIRCVILTGTGEKAFCAGADLKERIKLKEDQVLESVSLIQRTAALLDALPQPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEEL 195          

HSP 2 Score: 41.5874 bits (96), Expect = 5.814e-38
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  495 SGINQKGPIAIRMAKRAITKGLEVDMASALELEKSA 602
            + I+  GPIA+R AK AI KGLE D+A+ L +E+ A
Sbjct:  197 AAISANGPIAVRQAKFAINKGLETDLATGLAIEQKA 232          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: AUHM_MOUSE (Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 7.553e-38
Identity = 73/169 (43.20%), Postives = 106/169 (62.72%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQ----AQLKALELLR 499
            L+ L  A + +  D     ++IRS VP +FCAGADLKER +M  SE+  +V+ +RS  + +  LP+PTIA ID             CD+R+   +A +GL ET LAIIPG GGTQRLPR +G S+AK++IF+ R + G++A ++GL+++ +   Q    A  KAL+L R
Sbjct:   83 LKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAR 251          

HSP 2 Score: 36.1946 bits (82), Expect = 7.553e-38
Identity = 14/30 (46.67%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELEKS 599
            +GP+A+R+AK AI +G+EVD+ + L +E++
Sbjct:  256 QGPVAMRVAKLAINQGMEVDLVTGLAIEEA 285          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHD2_MOUSE (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.064e-36
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 457
            L  A   + ED    V++ RS+V  VFCAGADLKER QMS  E+  +V  LR   S + A P+PTIA +D             CDLRI   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR+++G  A  LGLVN+ V
Sbjct:   68 LLEALAQLREDQQVRVLLFRSAVKGVFCAGADLKEREQMSDVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAV 215          

HSP 2 Score: 34.6538 bits (78), Expect = 1.064e-36
Identity = 14/29 (48.28%), Postives = 23/29 (79.31%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELEK 596
            + PIA+R+ K AI +G+EVD+AS + +E+
Sbjct:  238 QAPIAVRLGKVAIDRGMEVDIASGMAIEQ 266          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHD2_BOVIN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Bos taurus GN=ECHDC2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.386e-36
Identity = 70/148 (47.30%), Postives = 94/148 (63.51%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 457
            L  A   + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A P PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR++SG  A +LGLVN+ V
Sbjct:   68 LLEALAQLREDRQVRVLIFRSGVKGVFCAGADLKEREQMSEAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAV 215          

HSP 2 Score: 34.6538 bits (78), Expect = 1.386e-36
Identity = 14/28 (50.00%), Postives = 23/28 (82.14%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELE 593
            + PIA+R++K AI +G+EVD+AS + +E
Sbjct:  238 QAPIAVRLSKVAIDRGIEVDIASGMAIE 265          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: ECHD2_HUMAN (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Homo sapiens GN=ECHDC2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 2.541e-35
Identity = 68/141 (48.23%), Postives = 92/141 (65.25%), Query Frame = 2
Query:   35 ISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCV 457
            + ED    V++ RS V  VFCAGADLKER QMS +E+  +V  LR   + + A P PTIA +D             CDLR+   +A++GL ET   ++PGAGGTQRLPR +G ++AK++IFTGR++SG +A  LGLVN+ V
Sbjct:   71 LREDRQVRVLLFRSGVKGVFCAGADLKEREQMSEAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAV 211          

HSP 2 Score: 33.113 bits (74), Expect = 2.541e-35
Identity = 14/28 (50.00%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  510 KGPIAIRMAKRAITKGLEVDMASALELE 593
            + PIA+R+ K AI +G EVD+AS + +E
Sbjct:  234 QAPIAVRLGKVAIDRGTEVDIASGMAIE 261          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 57/163 (34.97%), Postives = 80/163 (49.08%), Query Frame = 2
Query:    5 LRGLKHAFETISEDSSANVVMIRSSVPKVFCAGADLKERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALEL 493
            L+ + +    I  DS    V++  +  K F AGAD+ E ++M+  E   +       F  LE L  P IA ++             CD+RI    A  G PE GL I PG GGTQRL RLVG  +AK +IFT + +   +A+ +GLVN  V   +    A E+
Sbjct:   33 LKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKEMNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSELMNTAKEI 195          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_PECCP (Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.744e-19
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   26 FETISEDSSANVVMIRSSVPKVFCAGADLKERRQM-SPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVPAGQAQLKALELLR 499
            FE   + ++   +++ SS P  F AGAD+    Q  S  +        + TF  + ALP P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRLPRL+G   A D+I TGR +    A+  GLV+  VP       A+E+L+
Sbjct:   53 FEQARQHATLRGLILISSKPDSFIAGADITMLNQCRSAEQAENLAKQGQETFEQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLDSALDLILTGRHLRANQALRQGLVDEAVPHDILLDTAVEMLK 213          
BLAST of DR908468 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 55/153 (35.95%), Postives = 80/153 (52.29%), Query Frame = 2
Query:   14 LKHAFETISEDSSANVVMIRSSVPKVFCAGADLK--ERRQMSPSEIHFYVNTLRSTFSFLEALPIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDAMSLGLVNYCVP 460
            +K  F  + + S    +++ S  P  F AGAD++  E  + +P E        +  F  L  LP P +A I              CD R+C +  A  LGLPE  L ++PG+GGTQRLPRL+G   + D+I TG+++  K A  LG+V+ CVP
Sbjct:   39 MKAIFAQLKDSSGLKGLIVHSLKPDNFVAGADVRMLEACKTAP-EAEALARQGQELFQQLSDLPYPVVAAIHGPCLGGGLELALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVP 190          
The following BLAST results are available for this feature:
BLAST of DR908468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
AUHM_DICDI9.106e-3950.34Methylglutaconyl-CoA hydratase, mitochondrial OS=D... [more]
AUHM_HUMAN2.619e-3843.20Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]
YNGF_BACSU5.814e-3845.40Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
AUHM_MOUSE7.553e-3843.20Methylglutaconyl-CoA hydratase, mitochondrial OS=M... [more]
ECHD2_MOUSE1.064e-3647.97Enoyl-CoA hydratase domain-containing protein 2, m... [more]
ECHD2_BOVIN1.386e-3647.30Enoyl-CoA hydratase domain-containing protein 2, m... [more]
ECHD2_HUMAN2.541e-3548.23Enoyl-CoA hydratase domain-containing protein 2, m... [more]
CRT_CLOAB3.515e-2034.973-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]
FADJ_PECCP1.744e-1936.02Fatty acid oxidation complex subunit alpha OS=Pect... [more]
FADJ_VIBVY6.629e-1935.95Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16596 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908468 ID=DR908468; Name=DR908468; organism=Citrus sinensis; type=EST; length=620bp
CCGGTTGAGAGGCTTAAAGCATGCATTTGAAACTATCAGTGAGGATTCCT
CTGCTAATGTTGTCATGATACGTAGCTCGGTTCCTAAAGTGTTCTGTGCT
GGAGCTGATTTGAAGGAACGCAGGCAAATGAGTCCATCTGAGATTCATTT
TTATGTCAACACATTGCGATCTACATTCTCCTTCTTAGAGGCACTTCCTA
TTCCAACCATTGCTGTTATTGATGGAGCAGCATTGGGTGGTGGACTTGAA
ATGGCACTAGCATGTGATCTTCGCATCTGTGGAGAAGCAGCACTATTGGG
CTTGCCTGAAACAGGACTTGCTATAATTCCTGGGGCGGGTGGGACACAGC
GGCTTCCAAGATTAGTTGGAAAATCAGTAGCAAAAGATATTATATTTACT
GGCCGTAAAGTTAGTGGCAAAGATGCAATGTCTTTAGGTCTTGTCAATTA
CTGTGTTCCTGCTGGTCAAGCTCAGTTGAAGGCACTTGAATTGCTCAGGA
ATAAATCAGAAGGGTCCGATCGCCATTAGGATGGCTAAAAGGGCTATTAC
TAAGGGATTGGAGGTGGATATGGCATCGGCATTGGAACTGGAAAAGAGTG
CTACATTGGGACCTTGCATA
back to top