DR908467

Overview
NameDR908467
Unique NameDR908467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:998..1634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 8.358e-89
Identity = 166/212 (78.30%), Postives = 182/212 (85.85%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMKQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFKI*SRQGCP*D-AGIAALAFLMPTLG 634
            EKMVLAVFG L+ LWMTR+ITDDIPGWG +F  RAGDGT SV+MATLLFIIPS  +KGEKLMDWNKCKKLPWNI+LLLGAGFAIADGVRTSGLA+ LSK L FLE APY AIAP VCLI+A ITEFTSNNATTTL++PLLI+IAK M +HPLLLMVPGAIGAQF+FLLPTGTPSN+VGFTTGHIE K   + G P   AG   L+ LMPTLG
Sbjct:  319 EKMVLAVFGGLVVLWMTRNITDDIPGWGRIFAGRAGDGTVSVMMATLLFIIPSNIKKGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLETAPYWAIAPTVCLIAATITEFTSNNATTTLLVPLLIEIAKNMGIHPLLLMVPGAIGAQFAFLLPTGTPSNVVGFTTGHIEIKDMIKTGLPLKIAGTIFLSILMPTLG 530          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 76/188 (40.43%), Postives = 115/188 (61.17%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSM-KQKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+VL VF +   LW+TR     +  W   F     DGT ++ ++ LLF+IP+  K+K ++++DW   K LPW +++L G G A+A G+  SGLA+ L + L  +E    L I  ++ +    +TE TSN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++LP GTP N + F TG I  K
Sbjct:  296 EKVVLIVFLLASFLWITREFL--LKHW--TFTSEVADGTIAMFISVLLFLIPAKNKEKHKRIIDWEVAKDLPWGVLILFGGGLALAKGISESGLANWLGEQLKLIEGVSPLVIVLVITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIK 479          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 75/185 (40.54%), Postives = 103/185 (55.68%), Query Frame = 2
Query:   71 IPGWGALFNDR-AGDGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFKI*SRQG 580
            IPGW +LF      D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +G  ++F+LP  TP N + F+TGH+  K   R G
Sbjct:  362 IPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVGCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 79/208 (37.98%), Postives = 111/208 (53.37%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPSMK-------------QKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFKI*SRQG 580
            E+ V  +F +   L  +R     IPGW +LF      D    V + T+LF  PS K              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P L    ++ ++ A  TEF SN AT  + LP+L ++A  +HVHPL LM+PG +   ++F+LP  TP N + F+TGH+  K   R G
Sbjct:  340 EQAVFILFCLFAILLFSRD-PKFIPGWASLFAPGFVSDAVTGVAIVTILFFFPSQKPSLKWWFDFKAPNSETEPLLSWKKAQETVPWNIILLLGGGFAMAKGCEESGLSAWIGGQLHPLEHVPPLLAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLHVHPLYLMIPGTVSCSYAFMLPVSTPPNSIAFSTGHLLVKDMVRTG 546          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.506e-32
Identity = 80/208 (38.46%), Postives = 110/208 (52.88%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDR-AGDGTASVVMATLLFIIPSMKQ-------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFKI*SRQG 580
            E+ V  +F M   L  TR     IPGW +LFN     D    V + T+LF  PS +              + E L+ W K ++ +PWNIILLLG GFA+A G   SGL+  +   L  LE  P      ++ ++ A  TEF SN AT  + LP+L ++A  + VHPL LM+PG +G  F+F+LP  TP N + F +GH+  K   R G
Sbjct:  342 EQAVFILFCMFAILLFTRD-PKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRPSLKWWFDFKAPNTETEPLLTWKKAQETVPWNIILLLGGGFAMAKGCEESGLSVWIGGQLHPLENVPPALAVLLITVVIAFFTEFASNTATIIIFLPVLAELAIRLRVHPLYLMIPGTVGCSFAFMLPVSTPPNSIAFASGHLLVKDMVRTG 548          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I  K
Sbjct:  297 EKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIK 480          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I  K
Sbjct:  297 EKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIK 480          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I  K
Sbjct:  297 EKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIK 480          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I  K
Sbjct:  297 EKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIK 480          
BLAST of DR908467 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 2
Query:    2 EKMVLAVFGMLIALWMTRSITDDIPGWGALFNDRAGDGTASVVMATLLFIIPSMK-QKGEKLMDWNKCKKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEFK 562
            EK+V  +F +   LW+TR     +  W         DGT ++ ++ LLFIIP+   +K  +++DW   K+LPW +++L G G A+A G+  SGLA  L + L  L     + I  ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++LP GTP N + F +G I  K
Sbjct:  297 EKVVQTIFVLASLLWITREFL--LKKWEV--TSSVADGTIAIFISILLFIIPAKNTEKHRRIIDWEVAKELPWGVLILFGGGLALAKGISESGLAKWLGEQLKSLNGVSPILIVIVITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIK 480          
The following BLAST results are available for this feature:
BLAST of DR908467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TDT_ARATH8.358e-8978.30Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
SDCS_STAS16.285e-3640.43Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A3_MOUSE1.892e-3240.54Solute carrier family 13 member 3 OS=Mus musculus ... [more]
S13A3_RAT4.216e-3237.98Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A3_HUMAN5.506e-3238.46Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
SDCS_STAAR9.392e-3237.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN9.392e-3237.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM9.392e-3237.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC9.392e-3237.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA89.392e-3237.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16595 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-15_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908467 ID=DR908467; Name=DR908467; organism=Citrus sinensis; type=EST; length=634bp
TGAAAAGATGGTACTAGCTGTATTTGGGATGCTAATAGCATTGTGGATGA
CAAGATCAATAACAGATGACATTCCAGGTTGGGGAGCACTCTTCAATGAC
CGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATTGTTGTTCAT
AATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATTGGAACAAAT
GCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCTGGCTTTGCT
ATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCTGTCAAAAGC
ATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCTATCGTAT
GTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGCCACAACA
ACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGCATGTTCA
TCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTCTTTCT
TGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCGGGCAC
ATCGAATTCAAGATATGATCAAGACAGGGCTGCCCTTAAGATGCTGGCAT
TGCTGCTCTGGCCTTTCTAATGCCTACACTTGGT
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