DR908465

Overview
NameDR908465
Unique NameDR908465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908465_ssr374 microsatellite DR908465_ssr374:374..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5215 contig Csv1_Contig5215:843..1480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.407e-45
Identity = 99/215 (46.05%), Postives = 126/215 (58.60%), Query Frame = 1
Query:    1 LSPKAVPMKH---------VSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFND-TKWETEMDAFGLEKYPSVEL 615
            LSPK + MK            +   +KPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT             KLRG+FARLNFP+L+H+G+H+ G+FG+YKPLH+SVDAKL+AIC+++A                 +   K V  P  +  +K E  S +   SP           SSP SD++F D  +  +W    + F LEKYPS E+
Sbjct:  121 LSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQK-----QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWN---ETFSLEKYPSYEI 327          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.174e-40
Identity = 97/205 (47.32%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEL 615
            LSPK V MK    +  AKPTKLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT             KLRG+FARLNFP L+H+         +Y+PL +SVDAKL+AICQNLA                  + T  V LP        E   +++ SSP    S    GSSSP S+++F D  + + +   +   LEKYPS E+
Sbjct:   62 LSPKPVSMKQTGTS-AAKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNLAETTQKQVRSTKKSSSRKRSSTVAVKLP--------EEDYSSAGSSPLLTESYGSGGSSSPLSELTFGD-TEEEIQPPWNENALEKYPSYEI 248          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.932e-39
Identity = 102/222 (45.95%), Postives = 130/222 (58.56%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANI---KVENTSATSLSSPTPDHSLSDAG---SSSPESDV-SFLDFNDTKWETEMDAFGLEKYPSVEL----IGKLLE 633
            L+PK VPMK+++        KLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT             KLRGEFARLNFP  +H   +  G    + PLH+SVDAKLQ ICQ+L                    +T+ + LP +   +   K E   +      + ++S SD     SSSPES + +FLDF+D+ ++ E+ +FGLEK+PSVE+    I KL E
Sbjct:   77 LAPKPVPMKNMT------AQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSL-------------------RKTEDIDLPCSETELFPPKTEYQESEYGFLRSDENSFSDESHVESSSPESGITTFLDFSDSGFD-EIGSFGLEKFPSVEIDWDAISKLSE 271          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.883e-34
Identity = 89/212 (41.98%), Postives = 120/212 (56.60%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNN---NVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHS----LSDAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEL 615
            LSP  + MK+++ +  +K   LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTF+T             +LRG+ A+LNFP+L H          D  PL +SVD KLQAIC++L       +V              +T+  L  A     K E+     LS+ +P       L ++ +    SD +FLDF+DT++E E+ +FGL K+PSVE+
Sbjct:   50 LSPNRIRMKNLTPS-TSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSDTEFE-EIGSFGLRKFPSVEI 250          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 80/196 (40.82%), Postives = 98/196 (50.00%), Query Frame = 1
Query:   34 SNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKPLHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLS--DAGSSSPESDVSFLDFNDTKWETEMDAFGLEKYPSVEL 615
            S+  V+KP KLYRGVRQRHWGKWVAEIRLP+NRTRLWLGTFDT             KLRG+ ARLNFP L++       + G+Y P+ A+VDAKL+AI                      E + +P     T+        S+    S    HS S    GS SP SDV   +          + F L K PS E+
Sbjct:  132 SSGSVSKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI--------------------LAEPKNQPGKTERTSRKRAKAAASSAEQPSAPQQHSGSGESDGSGSPTSDVMVQEMCQEPEMPWNENFMLGKCPSYEI 307          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.333e-27
Identity = 83/212 (39.15%), Postives = 103/212 (48.58%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHVTGEFGDYKP-LHASVDAKLQAICQNLALNNNVXXXXXXXXXXXXEAETKPVLLPATAANIKVENTSATSLSSPTPDHSLSDA-----GSSSPESDVSFLDF-NDTKWETEMDAFGLEKYPSVEL 615
            L+ K   MK +  A   KP KLYRGVRQR WGKWVAEIRLPKNRTRLWLGTF+T             K+RG+ ARLNFP +           G YK  L  S++AK+++IC +  L                        LP      K E    +  S P  +    +        SSPESD++ LDF +D   E E    GL KYPS+E+
Sbjct:   91 LTAKPTSMKKIDVA--TKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQ--------GHYKQILSPSINAKIESICNSSDLP-----------------------LPQIEKQNKTEEV-LSGFSKPEKEPEFGEIYGCGYSGSSPESDITLLDFSSDCVKEDESFLMGLHKYPSLEI 268          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.229e-23
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    4 SPKAVPMKHVSNAQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKHHGAHV-TGEFGDYKPLHASVDAKLQAICQNL 339
            SP A     ++  +V K  KLYRGVRQRHWGKWVAEIRLP+NR R+WLGT+DT             KLRGE+ARLNFP+LK     +  G+      L  +VD K+Q+ICQ +
Sbjct:  115 SPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRV 227          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.811e-22
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 KAVPMKHVSN--AQVAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHLKH 249
            K  PMK  +    Q   PTKLYRGVRQRHWGKWVAEIRLP+NRTR+WLGTF+T              LRGEFA LNFP LKH
Sbjct:  211 KTQPMKSKTRKVVQTTTPTKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDLKH 292          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 45/62 (72.58%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   58 TKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFPHL 243
            TKLYRGVRQRHWGKWVAEIR P+NRTRLWLGTFDT             KLRGE ARLNFP L
Sbjct:  184 TKLYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPEL 245          
BLAST of DR908465 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 LSPKAVPMKHVSNAQVAK--PTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTXXXXXXXXXXXXXKLRGEFARLNFP 237
            LSP+   M  +S   V     TKLYRGVRQR WGKWVAEIR P++R RLWLGTFDT             KLRG  A LNFP
Sbjct:  119 LSPRGRMMMMMSQEAVQPYIATKLYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
The following BLAST results are available for this feature:
BLAST of DR908465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RAP24_ARATH7.407e-4546.05Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH7.174e-4047.32Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH7.932e-3945.95Ethylene-responsive transcription factor ERF060 OS... [more]
ERF56_ARATH5.883e-3441.98Ethylene-responsive transcription factor ERF056 OS... [more]
ERF55_ARATH4.363e-2940.82Ethylene-responsive transcription factor ERF055 OS... [more]
ERF57_ARATH5.333e-2739.15Ethylene-responsive transcription factor ERF057 OS... [more]
ERF61_ARATH1.229e-2350.44Ethylene-responsive transcription factor ERF061 OS... [more]
ERF62_ARATH8.811e-2262.20Ethylene-responsive transcription factor ERF062 OS... [more]
ERF53_ARATH3.134e-1972.58Ethylene-responsive transcription factor ERF053 OS... [more]
ERF54_ARATH5.532e-1655.56Ethylene-responsive transcription factor ERF054 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16593 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908465 ID=DR908465; Name=DR908465; organism=Citrus sinensis; type=EST; length=634bp
CTCAGCCCAAAAGCAGTCCCAATGAAGCATGTCAGCAACGCTCAAGTTGC
CAAGCCAACAAAGCTTTACAGGGGTGTGAGACAGAGGCACTGGGGCAAAT
GGGTTGCTGAAATAAGACTCCCCAAGAACAGAACCAGGCTTTGGCTTGGC
ACTTTTGATACAGCTGAAGAAGCTGCTTTGGCCTATGACCAAGCTGCTTA
TAAGCTAAGAGGAGAGTTTGCAAGACTCAATTTCCCGCACCTCAAGCATC
ATGGAGCCCATGTCACTGGTGAATTTGGTGATTACAAGCCTCTTCATGCT
TCCGTTGATGCAAAATTGCAAGCCATCTGCCAAAACTTGGCTCTTAACAA
CAACGTGCAGAAACAAACATCCAAGCAGCAGCAGCAGCAGCAGGAGGCTG
AAACAAAACCAGTGTTGTTACCAGCTACTGCTGCTAACATAAAGGTTGAG
AACACATCAGCAACTTCATTATCATCACCAACACCAGATCATTCATTATC
TGATGCTGGCTCATCATCGCCAGAATCTGACGTATCTTTCTTAGACTTCA
ATGACACCAAGTGGGAAACTGAAATGGATGCTTTTGGCTTGGAGAAATAC
CCTTCTGTGGAATTGATTGGGAAGCTATTAGAAA
back to top